Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2172 ATGGGAAGGTTGAGTTTAGAAGCGCTTTTCTTCGTTCTCGCAGCCTCACAATTCATATTTCCCACAACTTCTCAGCCACCCTTCTTATATCGCATCTGTTCCGACAAAGCCAACTACACCGCCGGCAGTCCTTTCAAGAAAAATCTCCACAACGTACTTCTCTCCATCTCTTCCAACACCCAAATCGATTACGGTTTCTACAACGCCACCTCCGGCAAAGTTCCCAACACAGCCACCGCTTTGGCTCTTTGCCGTGGAGGCGCCCCGTTGGAACAATGTAGAAGCTGTGTGTATAACTCAACGCTCAGGATTACTCAAGATTGTCCAAACCAGAGAGAAGCAGAGGGATGGTACCAGGATTGTCAAATTCGTTACTCAAACAACACAATTTACGGCGTCGGAGACAACACTGTACAGATAATCTTCTGGAACTTTGCAAAAGCGGAAGACCCCGACGGGTTTAATGTGGCAGTGAGGAATTTGTTCGATCGGCTGCGAGTGGAGGCTGCGTCGGGGAGTTCTATTAAGAAATCGGCTTGGGGAGGAGAGAAGATTCCAAGTCCGAGCATGGATACTGTATATGGATTGGTTGATTGTTTTCCTGATTTGTCTTACTTGGATTGTTTAAGCTGCCTCAATCAGCTTCAAACAACTCTTCCTAATTGTTGTAATGCGAGCATAGGGGTGAGATTAATTGCAACTAGTTGTCAACTCAATTACGAGCTCCACCCCATTTATCCTCCGCTTTCGTCTCCGCCTCCACCTCCGCCTCCTCCGCCTCTGTCTCCTCATTCTCCTCCTCCTCCGCCCTCACCCTTGTCATCTTCGCCTTCAAAACCTGGAAATAACGGCAATATTGGTAGAACTAGAACTGTTATAATCATTGTGGTGACCATCGTTTCTGCTGTCATTCTTCTTGGCATTTTTGTTATTTTGATATTGAGGAAGCAAAATCACAAAACATCATTAGACAATTCCGAAGATTTGTCTTTCGGAGACACCACGGTTGAAATTAGCAGTGTGGAGATGATTCAATTTGATTTTGATAGCGTTAAAGCTGCAACAAATGACTTTGCAAGTGAAAACAAGCTCGGACAAGGTGGATTTGGAGCTGTTTATAAGGGTAAGCTACCTAATGGACGACTAATAGCTGTGAAGAGGCTTGCGAATAATTCACAACAAGGGGATGTTGAATTCAAAAATGAAGTCCTTTTGGTGGTCAAGCTTCAACATCGTAACTTGGTTAGGCTACTTGGGTTCTGCTTGCAAAGAAGCGAAAGACTTCTCATATATGAGTTTGTACAAAATGGCAGCCTTGACCACTTTATATTTGATTTTGCAAAGCGGTCACTATTAGATTGGGAGACACGTTTCAAAATCATAAATGGCATTGCGAGAGGACTTCTTTACCTTCATGAAGATTCTCGTCATCGAATCATACATCGTGATCTTAAAGCTAGCAATATTTTGTTGGATACAGAAATGAATTCAAAGATTTCAGATTTTGGTATGGCAAGATTGTTTGAAGTAGATCAAACTCAAGGCAAATCAAGTAGAATTGTGGGAACTTATGGATATATGGCTCCAGAGTATGTAATGCATGGACACTTCTCAGTAAAATCAGATGTCTTTAGCTTTGGCATATTAGTCCTTGAGATTTTGAGTGGCAAAAAAAACACTAATTTTCACAATGGAGAACACTTAGAAAATCTCTCAAGCTTTGCATGGACAAATTGGAGGGAAGGAACAATTGAAAATGTCATAGATTCAACCCTTAGCGTTGGGTCAAGAACTGAGATGGTAAGATGCATCCATATTGGACTATTGTGTGTTCAAGAAGATGTAACAAATCGACCAACAATGACTTCAGTAGTTATGATGCTAAGTAGTTCTTCTATCACCCTTACTATACCCTCTAAACCAGCATTCTTCTTGCATAGTACTACAAATAGATCTAACGTATTATCAAGTTCAGACGGAACTAATTGTGAAAGTGTTTCTGATCAACCTTCGAAGAATAACATTTCAATTACAGAGATACATCCTCGTTAG 2052 41.57 MGRLSLEALFFVLAASQFIFPTTSQPPFLYRICSDKANYTAGSPFKKNLHNVLLSISSNTQIDYGFYNATSGKVPNTATALALCRGGAPLEQCRSCVYNSTLRITQDCPNQREAEGWYQDCQIRYSNNTIYGVGDNTVQIIFWNFAKAEDPDGFNVAVRNLFDRLRVEAASGSSIKKSAWGGEKIPSPSMDTVYGLVDCFPDLSYLDCLSCLNQLQTTLPNCCNASIGVRLIATSCQLNYELHPIYPPLSSPPPPPPPPPLSPHSPPPPPSPLSSSPSKPGNNGNIGRTRTVIIIVVTIVSAVILLGIFVILILRKQNHKTSLDNSEDLSFGDTTVEISSVEMIQFDFDSVKAATNDFASENKLGQGGFGAVYKGKLPNGRLIAVKRLANNSQQGDVEFKNEVLLVVKLQHRNLVRLLGFCLQRSERLLIYEFVQNGSLDHFIFDFAKRSLLDWETRFKIINGIARGLLYLHEDSRHRIIHRDLKASNILLDTEMNSKISDFGMARLFEVDQTQGKSSRIVGTYGYMAPEYVMHGHFSVKSDVFSFGILVLEILSGKKNTNFHNGEHLENLSSFAWTNWREGTIENVIDSTLSVGSRTEMVRCIHIGLLCVQEDVTNRPTMTSVVMMLSSSSITLTIPSKPAFFLHSTTNRSNVLSSSDGTNCESVSDQPSKNNISITEIHPR 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34288835 34291769 + CmPI595203_01g021720.1 Cmu01g2172 407678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2172 683 MobiDBLite consensus disorder prediction 249 276 - -
Cmu01g2172 683 Gene3D Transferase(Phosphotransferase) domain 1 434 636 - -
Cmu01g2172 683 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 26 130 - -
Cmu01g2172 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2172 683 ProSiteProfiles Protein kinase domain profile. 358 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2172 683 MobiDBLite consensus disorder prediction 249 284 - -
Cmu01g2172 683 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 108 644 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cmu01g2172 683 ProSiteProfiles Gnk2-homologous domain profile. 136 245 IPR002902 -
Cmu01g2172 683 ProSiteProfiles Gnk2-homologous domain profile. 27 130 IPR002902 -
Cmu01g2172 683 SMART serkin_6 358 633 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2172 683 Gene3D Phosphorylase Kinase; domain 1 320 433 - -
Cmu01g2172 683 MobiDBLite consensus disorder prediction 655 683 - -
Cmu01g2172 683 FunFam Cysteine-rich receptor-like protein kinase 28 434 636 - -
Cmu01g2172 683 Gene3D - 26 129 IPR038408 -
Cmu01g2172 683 Gene3D - 135 244 IPR038408 -
Cmu01g2172 683 FunFam Cysteine-rich receptor-like protein kinase 10 315 433 - -
Cmu01g2172 683 CDD STKc_IRAK 364 622 - -
Cmu01g2172 683 SUPERFAMILY Protein kinase-like (PK-like) 338 628 IPR011009 -
Cmu01g2172 683 Pfam Protein tyrosine and serine/threonine kinase 361 627 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2172 683 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524(InterPro)
Cmu01g2172 683 Pfam Salt stress response/antifungal 150 242 IPR002902 -
Cmu01g2172 683 Pfam Salt stress response/antifungal 33 127 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2172 Cmu-Chr1:34288835 Cmu01g2174 Cmu-Chr1:34299511 3.40E-237 dispersed
Cmu01g2171 Cmu-Chr1:34280149 Cmu01g2172 Cmu-Chr1:34288835 1.40E-163 tandem
Cmu01g2172 Cmu-Chr1:34288835 Cmu01g2173 Cmu-Chr1:34293961 4.20E-280 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75249 PF07714 PK_Tyr_Ser-Thr 6.40E-49 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2172 - - - 0.0