Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2173 ATGAGTTCCGAAACGCCTTTCTTCCTGCCTTTCTTCATTCTCGCAGTCCCACACTTAATATTTCCCACAACTTCTCAGCCACCCTTTTTATACTACACCTGCTCTTCCAATGCCAATTACACCATATACAGCCCTTTCAACATAAACCTGGACAACGTACTTCGCTCCATTTCTTCCAACACCCAAGTCGATTACGGCTTCTACAACGCCACTTCCGGCCAAGATCCCGACCGAGCCACCGCTTTGGCTCTTTGCCGTGGTGGTGTTTCATTGGAACAATGTAGAAGCTGTGTGAACAACTCAGCGCTCAGGATTACTCAAGATTGTCCAAACCAGAAAGAGGCAGAGGGATGGTACCAGGATTGTCAAATTCGTTACTCAAACAACTCTATTTACGGCGTTCTCGGAGACAGCACTACGCAGATATTCTTGTGGAACACTCAAATAGCGGAAGACCCAGATGGGTTCAATGAGGCATTGAGGAGTTTGTTGGATCGGCTGCGAATTGAGGCTGCGTCGGGGAGTTCTATTCGAAAGTCTGCTTGGGGAGAAAAGAGGGTTCGGAGTCCAAGCATGGATACCATATATGGATTGGTTGATTGTTTTCCTGATTTGTCTTACTTGGACTGTTTTAACTGCCTCGATCTGCTTCAAAATTCTCTTCCTAGTTGTTGCAACGCCAGCATAGGAGCCAGATTACTTGCAGTTAGTTGTGAACTCAATTATGAGATCCACCCCATCTATGCCTCACTTTTGTCTCCACCGCCGCCTCCTCCACCCACTCTGTCTTCTCCTTCGCCTCCGGCTCCGGCATCACCCCTGCCGTCTTTGCCTCCGAAACCTGGAAATAGTGGCAGTACTGATAGAAGTATAAGTAGAAGTGGAAGTGTTGTAATCGTTATGGTGGCCATCGTTTCTGCTGTCATTCTTCTTCTTGCCATTTTCATCATTTTGATATTGAGGAAGCGAAAGCACAAAAGACCATTAGGTGTATCTCTGGAAGACACCATCGATGAAATTAGCAGTGTGGAGATGATTCAATTTGATTTTGATAGCATTAAAATCGCAACAAATGACTTTGCAAGTGAAAACAAGCTCGGACAGGGTGGATTTGGAGCTGTTTATAAGGGTAAGCTACCTAATGGACGACTAATAGCTGTGAAGAGGCTTGCGAATAATTCACAACAAGGGGATGTTGAATTCAAAAATGAAGTCCTTTTGGTGGTCAAGCTTCAACATCGTAACTTGGTTAGGCTACTTGGGTTCTGCTTGCAAAGAAGCGAAAGACTTCTCATATATGAGTTTGTACAAAATGGCAGCCTTGACCACTTTATATTTGATTTTGCAAAGCGGTCACTATTAGATTGGGAGACACGTTTCAAAATCATAAATGGCATTGCGAGAGGACTTCTTTACCTTCATGAAGATTCTCGTCATCGAATCATACATCGTGATCTTAAAGCTAGCAATATTTTGTTGGATACAGAAATGAATTCAAAGATTTCAGATTTTGGTATGGCAAGATTGTTTGAAGTAGATCAAACTCAAGGCAATACAAGTAGAATTGTGGGAACTTATGGCTATATGGCTCCAGAGTATGTAAAGCGTGGACAATTCTCAATAAAATCAGATGTTTTTAGTTTTGGTGTCTTGGTTCTTGAGATTTTGAGTGGTCAAAGAAATAATAATTTTTACAATGGAGAACACTCCAAAAATCTCTTAAGCTTTGCATGGACAAATTGGAGGGCAGGAACAACTACAAATGTCATAGATTCCAGCCTTAGTATTGGTTCAAGGATCGAGATGATAAGATGCATTCATATTGGACTATTGTGTGTTCAAGAAAGTATAACAAATCGACCAACAATGACTTCAGTAGTTATGATGCTAAGTAGTTCTTCTTTCACTCTTCCTATACCCTCTAAACCAGGATTCTTCCTGCATAGTCTTACCAACAAATCGAACAAACTCTTAAAGTTAGATGGAAATAGTTGTGAAAGTCCGTCTATTCAACTTTCGAAGAATGACATTTCAATTACAGAGATCCATCCACGTTAG 2058 41.74 MSSETPFFLPFFILAVPHLIFPTTSQPPFLYYTCSSNANYTIYSPFNINLDNVLRSISSNTQVDYGFYNATSGQDPDRATALALCRGGVSLEQCRSCVNNSALRITQDCPNQKEAEGWYQDCQIRYSNNSIYGVLGDSTTQIFLWNTQIAEDPDGFNEALRSLLDRLRIEAASGSSIRKSAWGEKRVRSPSMDTIYGLVDCFPDLSYLDCFNCLDLLQNSLPSCCNASIGARLLAVSCELNYEIHPIYASLLSPPPPPPPTLSSPSPPAPASPLPSLPPKPGNSGSTDRSISRSGSVVIVMVAIVSAVILLLAIFIILILRKRKHKRPLGVSLEDTIDEISSVEMIQFDFDSIKIATNDFASENKLGQGGFGAVYKGKLPNGRLIAVKRLANNSQQGDVEFKNEVLLVVKLQHRNLVRLLGFCLQRSERLLIYEFVQNGSLDHFIFDFAKRSLLDWETRFKIINGIARGLLYLHEDSRHRIIHRDLKASNILLDTEMNSKISDFGMARLFEVDQTQGNTSRIVGTYGYMAPEYVKRGQFSIKSDVFSFGVLVLEILSGQRNNNFYNGEHSKNLLSFAWTNWRAGTTTNVIDSSLSIGSRIEMIRCIHIGLLCVQESITNRPTMTSVVMMLSSSSFTLPIPSKPGFFLHSLTNKSNKLLKLDGNSCESPSIQLSKNDISITEIHPR 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34293961 34297389 + CmPI595203_01g021730.1 Cmu01g2173 407679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2173 685 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Cmu01g2173 685 Pfam Salt stress response/antifungal 151 243 IPR002902 -
Cmu01g2173 685 FunFam Cysteine-rich receptor-like protein kinase 28 436 638 - -
Cmu01g2173 685 Pfam Protein tyrosine and serine/threonine kinase 363 627 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2173 685 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 94 646 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cmu01g2173 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2173 685 Gene3D Transferase(Phosphotransferase) domain 1 436 636 - -
Cmu01g2173 685 CDD STKc_IRAK 366 624 - -
Cmu01g2173 685 SMART serkin_6 360 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2173 685 Gene3D Phosphorylase Kinase; domain 1 329 435 - -
Cmu01g2173 685 ProSitePatterns Protein kinases ATP-binding region signature. 366 388 IPR017441 GO:0005524(InterPro)
Cmu01g2173 685 SUPERFAMILY Protein kinase-like (PK-like) 340 630 IPR011009 -
Cmu01g2173 685 MobiDBLite consensus disorder prediction 256 289 - -
Cmu01g2173 685 ProSiteProfiles Gnk2-homologous domain profile. 138 247 IPR002902 -
Cmu01g2173 685 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Cmu01g2173 685 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 131 - -
Cmu01g2173 685 ProSiteProfiles Protein kinase domain profile. 360 636 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2173 685 MobiDBLite consensus disorder prediction 256 280 - -
Cmu01g2173 685 Gene3D - 27 130 IPR038408 -
Cmu01g2173 685 Gene3D - 138 246 IPR038408 -
Cmu01g2173 685 FunFam Cysteine-rich receptor-like protein kinase 10 321 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2173 Cmu-Chr1:34293961 Cmu03g1108 Cmu-Chr3:5497870 5.00E-156 dispersed
Cmu01g2172 Cmu-Chr1:34288835 Cmu01g2173 Cmu-Chr1:34293961 4.20E-280 tandem
Cmu01g2173 Cmu-Chr1:34293961 Cmu01g2174 Cmu-Chr1:34299511 4.90E-244 tandem
Cmu01g1975 Cmu-Chr1:33039984 Cmu01g2173 Cmu-Chr1:34293961 1.70E-207 transposed
Cmu01g2173 Cmu-Chr1:34293961 Cmu02g0174 Cmu-Chr2:1666236 2.40E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75250 PF07714 PK_Tyr_Ser-Thr 5.00E-48 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2173 - - - 0.0