Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2174 ATGGATATGGGCAATTTGAGTTTGAGATCAAGGCATTTGCTCCTCTACTCTGTTATTTCACAATTGATGTTTATTATAACCACAACATCTCAGCCTGACTTCTTTTATTACCTCTGTTCAAACAAAGGCAACTACACCAACAACAGTCCATTCAAGAAAAATCTCGACAACGTTCTTGCTTCACTCTCCTCCAATTCCAACACCGACAGCCGCCGGGTCGACTACGGTTTCTATAATGCCACCGCCGGTGAAGATCCCGACACAGCCAACGCTAAGGTTCTTTGTCGTAAGGGGGTTCCGTTGGAACAATGCAGAAGTTGTGTGAATGACTCAGTCCGCAGGATTACACAAAACTGCCCAACCCAGAAGGAAGGTGCAGGATGGTACCACCATTGCCAGATTCTTTACTCAAACAACTCTGTTCACGATGAGACAGATTTTTCCGTGACTCAAATTTATTACAACACCGGTGCAGCCCCAGACAAGAACAGTTTCAATGAGGAACTGAGAGAGTTAATGGATCGACTGCGAGAGGAGGCTGCATCAGGGACTTCGATTCGAAAGTCTGCAGGCGGAGATGTGAAGCTTAAAAGTCCGAATACGTATACAATATATGGGCTTGTTGATTGTTTTCCCGACATGTCGTACTTCGATTGTGATGTCTGCCTCAATCGGCTTCAAAGTAATCTTCCTTCTTGTTGTAGTGGCAGCATAGGAGCAAGACTGCTTGCAGCTAGTTGTCAAATTAATTATGAAATTCACCCTCTGTATGAATCACTTCTCTCTCCACCTTTGCCGCCTCCGCCGACATCACCATCAGCTCCTAATCTCGCCCCTCCATCTTCTCCGTCAGCACATGGAAATAATGGCAATACTGCTAGAACTGTTATAATTGTCGTGGTATCCATCGTTTCAGCCATTATTTTCTTTGTTGGCGTTTGCTTGATTATGAGATTTAGAAACAGAAAGCAAAAAAGACCATTAAGAAAATTTGAAAATGTTGCTATTGGAGATGCCAGTGATGAAATTAGCAGTACAGAGACAATTCATTTTGATTTTGATGTCGTTAAGGATGCAACTAATGACTTCTCAAGTGAAAACAAGCTAGGACAAGGTGGATTTGGAGCTGTTTACAAGGGTAAGCTACCTAATGGACAACATATTGCAGTGAAGAGGCTTGCACATAATTCACAACAAGGAGATGTTGAATTCAAAAATGAAGTACTTTTGGTAGTCAAGCTTCAGCATCGAAACTTGGTTAGACTATTGGGATTCTGCTTGCAAGGAAGCGAAAGACTTCTCATATATGAATTTGTACCAAATGGTAGCCTTGACCATTTCATATTTGATCTTGGGAAGCGGATACAATTAGATTGGGAAAAACGATATAAAATCATAAATGGCACTGCACGAGGACTTCTTTACCTTCATGAAGATTCTCGCCTTCGAATCATTCATCGTGATCTTAAAGCTAGCAATATTTTGTTGGATGAAGAAATGAATCCAAAGATCGCCGATTTTGGTTTAGCAAGATTGTTCGAAGTAGATGAGACTCAAGGCAATACAAGTAGGATTGTGGGAACTTATGGCTATATGGCTCCAGAGTATATAGTACATGGACAATTTTCGGTAAAATCAGATGTCTTTAGCTTTGGTGTTTTGGTTCTTGAAATTGTGAGTGGCCAAAAAAACAATTGTTTTCGCAATGGAGAAAATATTGGAGATCTTACCAGCTTTACTTGGAATAATTGGAGGGCTAGAGCAACCACAAATGTCATAGATTCAACACTTGGTGTTGGCTCAAGGATTGAAATGATAAGATGCATTCACATTGGACTATTGTGTGTTCAAGAAAATGTAGCAAACCGACCAACAATGGCTTCGGTGGTTATGATGTTAAGTAGTTCTTCTTTCACTCTCCCTATACCCTCTAAACCTGCATTCTTCATGCATAGCATCACCAATGGATCCAACACAATGTTAGCATCAAATGAGACTAATCATTCTAAAAGCACATCTCTTCAACATTCAGAAAGTGCCGACGTTTCAATTACAGAACTTCACCCTCGTTAA 2073 40.81 MDMGNLSLRSRHLLLYSVISQLMFIITTTSQPDFFYYLCSNKGNYTNNSPFKKNLDNVLASLSSNSNTDSRRVDYGFYNATAGEDPDTANAKVLCRKGVPLEQCRSCVNDSVRRITQNCPTQKEGAGWYHHCQILYSNNSVHDETDFSVTQIYYNTGAAPDKNSFNEELRELMDRLREEAASGTSIRKSAGGDVKLKSPNTYTIYGLVDCFPDMSYFDCDVCLNRLQSNLPSCCSGSIGARLLAASCQINYEIHPLYESLLSPPLPPPPTSPSAPNLAPPSSPSAHGNNGNTARTVIIVVVSIVSAIIFFVGVCLIMRFRNRKQKRPLRKFENVAIGDASDEISSTETIHFDFDVVKDATNDFSSENKLGQGGFGAVYKGKLPNGQHIAVKRLAHNSQQGDVEFKNEVLLVVKLQHRNLVRLLGFCLQGSERLLIYEFVPNGSLDHFIFDLGKRIQLDWEKRYKIINGTARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGLARLFEVDETQGNTSRIVGTYGYMAPEYIVHGQFSVKSDVFSFGVLVLEIVSGQKNNCFRNGENIGDLTSFTWNNWRARATTNVIDSTLGVGSRIEMIRCIHIGLLCVQENVANRPTMASVVMMLSSSSFTLPIPSKPAFFMHSITNGSNTMLASNETNHSKSTSLQHSESADVSITELHPR 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34299511 34302438 + CmPI595203_01g021740.1 Cmu01g2174 407680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2174 690 MobiDBLite consensus disorder prediction 264 287 - -
Cmu01g2174 690 Coils Coil 162 182 - -
Cmu01g2174 690 ProSiteProfiles Protein kinase domain profile. 363 639 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2174 690 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524(InterPro)
Cmu01g2174 690 Gene3D Transferase(Phosphotransferase) domain 1 439 639 - -
Cmu01g2174 690 MobiDBLite consensus disorder prediction 660 682 - -
Cmu01g2174 690 FunFam Cysteine-rich receptor-like protein kinase 28 439 641 - -
Cmu01g2174 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2174 690 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 117 649 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cmu01g2174 690 SUPERFAMILY Protein kinase-like (PK-like) 351 671 IPR011009 -
Cmu01g2174 690 FunFam Cysteine-rich receptor-like protein kinase 10 323 438 - -
Cmu01g2174 690 MobiDBLite consensus disorder prediction 660 690 - -
Cmu01g2174 690 Gene3D Phosphorylase Kinase; domain 1 329 438 - -
Cmu01g2174 690 Pfam Protein tyrosine and serine/threonine kinase 366 631 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2174 690 Pfam Salt stress response/antifungal 39 138 IPR002902 -
Cmu01g2174 690 Pfam Salt stress response/antifungal 159 252 IPR002902 -
Cmu01g2174 690 ProSiteProfiles Gnk2-homologous domain profile. 147 256 IPR002902 -
Cmu01g2174 690 Gene3D - 31 140 IPR038408 -
Cmu01g2174 690 Gene3D - 146 255 IPR038408 -
Cmu01g2174 690 MobiDBLite consensus disorder prediction 264 279 - -
Cmu01g2174 690 ProSiteProfiles Gnk2-homologous domain profile. 33 141 IPR002902 -
Cmu01g2174 690 CDD STKc_IRAK 369 626 - -
Cmu01g2174 690 SMART serkin_6 363 638 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1975 Cmu-Chr1:33039984 Cmu01g2174 Cmu-Chr1:34299511 3.20E-211 dispersed
Cmu01g2168 Cmu-Chr1:34262115 Cmu01g2174 Cmu-Chr1:34299511 2.80E-202 dispersed
Cmu01g2169 Cmu-Chr1:34268532 Cmu01g2174 Cmu-Chr1:34299511 3.30E-208 dispersed
Cmu01g2171 Cmu-Chr1:34280149 Cmu01g2174 Cmu-Chr1:34299511 1.30E-174 dispersed
Cmu01g2172 Cmu-Chr1:34288835 Cmu01g2174 Cmu-Chr1:34299511 3.40E-237 dispersed
Cmu01g2174 Cmu-Chr1:34299511 Cmu03g1108 Cmu-Chr3:5497870 6.20E-146 dispersed
Cmu01g2173 Cmu-Chr1:34293961 Cmu01g2174 Cmu-Chr1:34299511 4.90E-244 tandem
Cmu01g2174 Cmu-Chr1:34299511 Cmu01g2175 Cmu-Chr1:34305947 4.50E-205 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75251 PF07714 PK_Tyr_Ser-Thr 7.60E-48 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2174 - - - 0.0