Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2176 ATGATGACTCGATCTTTTCTACTGCAAATAAATGCTGAAAATTACATCGAAACAAGTGGCTCCAAACGGTTTCCTCTGAATAATTGTACAACGAAAGGCACTAGAGATATTTCAATCATCTGTTTTTATCTCTTCAAGAAAAAGTTCGTCTCTTTATCTGCTACCCAAACCAAAATCATGTTCTGTTTCCTCGATTACAGATCTTTGCCAATTTTGTTGCTACTTCTAATTTCAATCCTTGGGCTCAGCCGCTCCCATCATTTTGAACCAAAATATAGGTTCCACATCTGTTCAGCGCCAAGTGATAACACAACCAATTCTAATCAGGGTTCGGACCTCAATGGCCTGCTGAGTTCCCTATCAGAAGCTTCGTCTGACAGCTTCTACAACAGAACTTTCAATGGAATATACGGCCTCGTCCTTTGCCGAGGCGATATTAACAGCGATAACTGTCACAGTTGTGTCAGTGCTGCAAGCAAAGAATTAAGGGATCAATGCCCTTTAAGAGTTAACGCCACAATATGGTACGATGAGTGTATGCTGAGATACTCAGACAAGAACTTCTTGGGGACTGTAGAGATATTGCCGAGATTCCTTATGGGCGATTCTGGGAACCAGACATCACCAGATGATCGGAACATTGACGGGCCTGATCTATTGTCTCAGATGGCCAGTGAAGCTGCAGAGCTAGAGATGATGTTCAAGGCAAACAAGTTGGATAACCGTGGGACACGCTATGGATTGGTTCAGTGCACAAGGGATCTCAACAGTAGCGAGTGTTTTACATGTTTGACGGCTCTGCTGGAGGAGATCAAGCAGGTTTACAAAGGGAGAGTGGGGTGGAGAATTTTGGGCCCAAGTTGTAGCATAACGTATGAGCAATATCTTTTCTATCAGCTACCAGCTTCGTGTCAAGGATTAAGCGCGAAAATGATTGTAGCAATCACTATATCAACAGTTGCAGCAGTAGCAATTCTTGCAAGTCTATCGTATTGTTTACTTTTGTCAAAGAAGAGACGACAGGAGATGGACACAGGCGAACAAGTTCTGTTGCGAAATTTGGGAGATGCGAAGTCCGCAGAATTGATGAAGCAAGATTTGCATTCACGAGATAGAGACAATGATGAAGAAATGCATTACTTCAGTTTCACCACTCTACAGGCTGCCACAAACAACTTTGCAGATGCAAATAGGCTTGGAGAAGGTGGTTTTGGTCCGGTTTTCAAGGGAAAGTTGATGAATGGGGAAGAAATAGCTGTAAAAAGACTGTCGGTTAAGTCGAGTCAAGGTCACGATGAGTTCAAGAATGAAGTCATGGTCATAATGAAGCTTCAACATAAAAATCTAGTCAGACTTCTGGGATGCTGTCTGGAGGGAGAGGAAAAGCTCCTTGTCTATGAGTACATGGCAAACACTAGTCTAGATGCCTTCCTATTTGATCCAGTTAAATGCAAACAACTCGACTGGCTTAAGCGCAACAACATCATCAATGGAGTTGCAAAAGGAATTCTATATCTACACGAAGACTCTCGGCTCAAAATTATTCATAGGGATTTAAAAGCTAGCAATGTTTTGTTGGATGATGAGATGAAGGCAAAGATATCAGACTTTGGAACGGCCAGAATTTTTGGAGGCAAACAAGTTGAGGCTAGCACCAACAGAGTTGTTGGCACTTTTGGATATATGGCACCAGAATATGCAATGGAGGGAGTGTTTTCAATAAAGTCTGATGTTTACAGTTTTGGGATTTTAATGTTAGAAGTGATAAGCGGAAGAAAGAACAGCGGTTTCTTCAAAGTAGACAATGCACAGAGCCTTCTATCACAGGCATGGCAACTATGGAAGGAAGGGAGAGAAGAGGAAATGGTTGATCCGAACCTGGTTGGAGAATGTTCTTTAAGCGAAGCTCTGAGATGGATCCAAATTGGTCTGCTGTGTGTACAAGAAGACCCTAACATCAGACCCACCATGTCAATGGTTGTTCTAATGCTTGGAAGCAAATCGATTCACCTTCCCCAACCGTCGAAACCTCCATTCTTTCCGATTGGATTTCCGATGTCCGCCGATCAATCTTCAATGACTTTACTGGGAACGGGATATCTCTCCACTCAATCGTCTACCACTGCTTCTATCTAG 2136 42.7 MMTRSFLLQINAENYIETSGSKRFPLNNCTTKGTRDISIICFYLFKKKFVSLSATQTKIMFCFLDYRSLPILLLLLISILGLSRSHHFEPKYRFHICSAPSDNTTNSNQGSDLNGLLSSLSEASSDSFYNRTFNGIYGLVLCRGDINSDNCHSCVSAASKELRDQCPLRVNATIWYDECMLRYSDKNFLGTVEILPRFLMGDSGNQTSPDDRNIDGPDLLSQMASEAAELEMMFKANKLDNRGTRYGLVQCTRDLNSSECFTCLTALLEEIKQVYKGRVGWRILGPSCSITYEQYLFYQLPASCQGLSAKMIVAITISTVAAVAILASLSYCLLLSKKRRQEMDTGEQVLLRNLGDAKSAELMKQDLHSRDRDNDEEMHYFSFTTLQAATNNFADANRLGEGGFGPVFKGKLMNGEEIAVKRLSVKSSQGHDEFKNEVMVIMKLQHKNLVRLLGCCLEGEEKLLVYEYMANTSLDAFLFDPVKCKQLDWLKRNNIINGVAKGILYLHEDSRLKIIHRDLKASNVLLDDEMKAKISDFGTARIFGGKQVEASTNRVVGTFGYMAPEYAMEGVFSIKSDVYSFGILMLEVISGRKNSGFFKVDNAQSLLSQAWQLWKEGREEEMVDPNLVGECSLSEALRWIQIGLLCVQEDPNIRPTMSMVVLMLGSKSIHLPQPSKPPFFPIGFPMSADQSSMTLLGTGYLSTQSSTTASI 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34309652 34312842 - CmPI595203_01g021760.1 Cmu01g2176 407682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2176 711 Gene3D Phosphorylase Kinase; domain 1 367 468 - -
Cmu01g2176 711 SMART serkin_6 393 662 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2176 711 FunFam Uncharacterized protein 469 670 - -
Cmu01g2176 711 ProSiteProfiles Protein kinase domain profile. 393 680 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2176 711 ProSiteProfiles Gnk2-homologous domain profile. 91 188 IPR002902 -
Cmu01g2176 711 Pfam Protein tyrosine and serine/threonine kinase 397 661 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2176 711 Pfam Salt stress response/antifungal 97 185 IPR002902 -
Cmu01g2176 711 Pfam Salt stress response/antifungal 218 295 IPR002902 -
Cmu01g2176 711 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 357 468 - -
Cmu01g2176 711 Gene3D Transferase(Phosphotransferase) domain 1 469 671 - -
Cmu01g2176 711 Gene3D - 90 188 IPR038408 -
Cmu01g2176 711 Gene3D - 199 297 IPR038408 -
Cmu01g2176 711 CDD STKc_IRAK 399 664 - -
Cmu01g2176 711 ProSiteProfiles Gnk2-homologous domain profile. 194 297 IPR002902 -
Cmu01g2176 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2176 711 SUPERFAMILY Protein kinase-like (PK-like) 375 691 IPR011009 -
Cmu01g2176 711 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 215 680 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2176 Cmu-Chr1:34309652 Cmu03g1105 Cmu-Chr3:5477034 8.10E-133 dispersed
Cmu01g2175 Cmu-Chr1:34305947 Cmu01g2176 Cmu-Chr1:34309652 2.90E-53 tandem
Cmu01g2176 Cmu-Chr1:34309652 Cmu01g2177 Cmu-Chr1:34315813 3.00E-196 tandem
Cmu01g2176 Cmu-Chr1:34309652 Cmu02g0172 Cmu-Chr2:1651062 9.80E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75253 PF07714 PK_Tyr_Ser-Thr 1.50E-47 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2176 - - - 0.0