Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2177 ATGATTGATTTCCTCATTCAAACACCTTCTCCCTTGCCTTTAACTTTACTGCTTCTGATTTCAATATCTGGATTCATAGTCCCTTGTTGTACCCAACGTTATTTATACTGCTCAGGATCCAACACGGCTCACCCCAATCTAAATTCTGACATTCATTTCCTATTGAATTCCTTGGTCTCTCGAGCTTCTTCTCGCACTTTCTACACTGAGACCTCTAATGGAATTCATGGCCTCTTCCTCTGCCGAGGGGATCTTCCCAACGAGGCCTGTTGTACCTGCGTCGAAGGAGCTAGTCAACAAATCAAGGTCGACTGCGCATCACAAACAAACGGTACCATAGGCTTTGATGAATGCATGTTGAGATACTCAGCTGTGAACTTCTTTGGAGTCCTGGAGACAGCTCCAAGAACACTGCTATATAACAGTCTGAACCAATCTACTTTTGAAGATCGTGATTTCGTCGATCTTGCATTGGTGTCTAATTTAGTAAGAGATGCTACAAATGCAGATTTGATGTTCAAGGAAGGTGAGGTAAATGTGCAGGGGGTGGATCAGAGATTTGGATTTGCACAGTGTACAAGAGATATCATCAAGCGTGATTGTGAGTTCTGTTTGACAATTTTGGTGGATTACGCAAAGGGATGTTGCCTAAGGCAAAGAGGATGGCGAGTTTTAGCCCCCAATTGTAATTTAAGAGTTGAGGCCTTTCGTTTTTATGGAATACCAGGACCTCCATCTTTGCCACTTGATGAAGAAGGAGGGAACAGAACAAGGATCATAGTCATCAGCATATCAACAGTTGCAGCAGCGGCAATTCTGCTAGGCCTATTGTATGGCTCATTTTTATGGAGAAACAAAAGACAGGAGAGGGATAGAAGTGAAGAGCTTCCTTTGCGAAATCGGGCAGATCCCTCACTGAGGCAAAATTTTGATGCAACAAATCACGACAATGATGGAGATATGCATTACTTCAACTTTAGTACTCTAAAGGCTGCTACAGATGACTTTTCAGATGTTCATAAACTTGGAGAAGGGGGGTTTGGTCCAGTTTACAAGGGAAAGCTGATGGGTGGTGAGGAAGTAGCAGTTAAAAGACTATCAACAAAATCAAGTCAAGGACATGAAGAGTTCAAGAATGAAGCAAAGGTCATTTGGAAGCTTCAACATAAGAATCTGGTCAGGCTCTTGGGATGTTGTGTTGAAGGAGAAGAAAAGCTTTTAGTCTATGAGTACATGGCAAATACTAGTCTTGATGCTTTCTTGTTTGATCCATTGAAGTGCAAACAACTTGACTGGCTCAAGCGTGAAAACATTGTCAATGGGATTGCAAGAGGAATTCTCTACCTCCATGAAGATTCTCGACTCAAAATCATCCATAGAGATTTGAAAGCGAGCAATGTACTGTTAGATGAGGAGATGAATCCAAAAATATCAGACTTTGGAACTGCTAGGATATTTGGAGGCAAGCAAATTGATGCCAGCACCAATAGAATAGTAGGAACATATGGTTATATGGCACCAGAGTATGCTATGGAGGGAGTTTTCTCAGTTAAATCCGATGTATACAAACCGCAGAACCTTCTGTCATATGCGTGGGAGCTATGGAGTGAAGGTAGAGCAGAAGAAATGATAGACAAGAACTTGGCTGGAGATTGTCCTGAGAGTGAGGCTGTAAAATGGATCCACATAGGGTTGTTGTGTGTGCAAGAAGATCCTGACATCAGGCCCACCATGTCAATGGTTGTTCTAATGCTTGGAAGCCAATCGATTCACCTTCCTCAGCCATCAAAACCTCCATTTCTTACAGCTAGAGGGTCTCTAAGTAGATATCAATATTCAACAACTGAAACAGGGACAAGGTTACACACCACAGATCAATCGTCTACTACTGCTTCTATCTAG 1902 42.27 MIDFLIQTPSPLPLTLLLLISISGFIVPCCTQRYLYCSGSNTAHPNLNSDIHFLLNSLVSRASSRTFYTETSNGIHGLFLCRGDLPNEACCTCVEGASQQIKVDCASQTNGTIGFDECMLRYSAVNFFGVLETAPRTLLYNSLNQSTFEDRDFVDLALVSNLVRDATNADLMFKEGEVNVQGVDQRFGFAQCTRDIIKRDCEFCLTILVDYAKGCCLRQRGWRVLAPNCNLRVEAFRFYGIPGPPSLPLDEEGGNRTRIIVISISTVAAAAILLGLLYGSFLWRNKRQERDRSEELPLRNRADPSLRQNFDATNHDNDGDMHYFNFSTLKAATDDFSDVHKLGEGGFGPVYKGKLMGGEEVAVKRLSTKSSQGHEEFKNEAKVIWKLQHKNLVRLLGCCVEGEEKLLVYEYMANTSLDAFLFDPLKCKQLDWLKRENIVNGIARGILYLHEDSRLKIIHRDLKASNVLLDEEMNPKISDFGTARIFGGKQIDASTNRIVGTYGYMAPEYAMEGVFSVKSDVYKPQNLLSYAWELWSEGRAEEMIDKNLAGDCPESEAVKWIHIGLLCVQEDPDIRPTMSMVVLMLGSQSIHLPQPSKPPFLTARGSLSRYQYSTTETGTRLHTTDQSSTTASI 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34315813 34318621 - CmPI595203_01g021770.1 Cmu01g2177 407683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2177 633 SMART serkin_6 336 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2177 633 ProSiteProfiles Gnk2-homologous domain profile. 29 127 IPR002902 -
Cmu01g2177 633 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 147 600 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cmu01g2177 633 Gene3D Phosphorylase Kinase; domain 1 310 411 - -
Cmu01g2177 633 Pfam Salt stress response/antifungal 158 234 IPR002902 -
Cmu01g2177 633 Pfam Salt stress response/antifungal 40 123 IPR002902 -
Cmu01g2177 633 Gene3D Transferase(Phosphotransferase) domain 1 412 593 - -
Cmu01g2177 633 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 301 411 - -
Cmu01g2177 633 ProSiteProfiles Protein kinase domain profile. 336 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2177 633 Gene3D - 137 238 IPR038408 -
Cmu01g2177 633 Gene3D - 30 127 IPR038408 -
Cmu01g2177 633 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 412 503 - -
Cmu01g2177 633 MobiDBLite consensus disorder prediction 614 633 - -
Cmu01g2177 633 Pfam Protein tyrosine and serine/threonine kinase 340 582 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2177 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2177 633 SUPERFAMILY Protein kinase-like (PK-like) 319 614 IPR011009 -
Cmu01g2177 633 ProSiteProfiles Gnk2-homologous domain profile. 133 238 IPR002902 -
Cmu01g2177 633 CDD STKc_IRAK 342 585 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2177 Cmu-Chr1:34315813 Cmu03g1105 Cmu-Chr3:5477034 3.80E-118 dispersed
Cmu01g2177 Cmu-Chr1:34315813 Cmu01g2179 Cmu-Chr1:34323455 7.50E-90 proximal
Cmu01g2176 Cmu-Chr1:34309652 Cmu01g2177 Cmu-Chr1:34315813 3.00E-196 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75254 PF07714 PK_Tyr_Ser-Thr 1.10E-41 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2177 - - - 0.0