Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2188 ATGGCGGCTCCATATCCGGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGTTCTTCAATCCAACGCTGGCTTGACGCCGGTCACCGGACTTGCCCAATCACCCAATTGCCCCTTCCTCAAAACCCTTCCCTAATCCCTAACCATGCCCTCCGAAGCTTAATTTCAAATTTCAACCCTGTTTCTCTTTCCAAGCCATTTCTCCCTCATCCGCCGCCTCAAACCCTAATCTCGATTCTCATCTCTCCTTCTTCCTCCCTCGATTCCAAGCTCGATTGCCTCAATCAACTCGCAAGGATTTCAAAGCGCGATTCCGCTATGCGTCGAAGATTGACCGAGTCCGGTGCTGTCTCGGCTGTTCTTAAATGCGTTGGTTCTGACGATCCCAGCCTCCAAGAGAAGGCTCTCTCGCTCTTGGTTAATCTCAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAGGGAGCTATTGGTCTCACCGTGGCTGCTCTTCAAGCTAGGTCCGCGGATTGCAGAGCCGTAGCAGCCACGATGCTGACCAGCTTGGCGGTTGTGGAGGTTAACAAGGCTACAATTGGGGCATACCCCTATGCAGTTCGTTCTCTGGTTTATCTCTTACGGAACGGGAATAACAGAGAGCAGAAAGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCTGGGAACCGTGTGCGGGCTGTGGAATGTGGGGCTGTTCCAATTTTGCTTAAAATTGCAAACTCTGGGCTAGATAGAGCAGTGGAAGTTCTGGGGGTTTTGGCTAAGTGCAGGGAAGGTCGAGAAGAGATGCAACGGTTCAAAGGATGTGTGGAGATTTTGGGTCGTGTTTTGCGAAATGGAGGCCCAAGAGGAATTCAATATGCTCTTCTAACTCTGACTTCCCTCTGCTGCCATTGCGAGCGAGTGTGCGTGGAGGCAAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACGATAATGAAAAGATCAGAGCAAATGCTGCAAATTTGATTCATATACTGCGCGGAAACAACCCATGA 1098 49.64 MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPSLIPNHALRSLISNFNPVSLSKPFLPHPPPQTLISILISPSSSLDSKLDCLNQLARISKRDSAMRRRLTESGAVSAVLKCVGSDDPSLQEKALSLLVNLSLDDDNKVGLVAEGAIGLTVAALQARSADCRAVAATMLTSLAVVEVNKATIGAYPYAVRSLVYLLRNGNNREQKEAATALYAICSFPGNRVRAVECGAVPILLKIANSGLDRAVEVLGVLAKCREGREEMQRFKGCVEILGRVLRNGGPRGIQYALLTLTSLCCHCERVCVEARREGVLGICMTLIDDDNEKIRANAANLIHILRGNNP 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34377144 34378241 - CmPI595203_01g021880.1 Cmu01g2188 407694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2188 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515(InterPro)
Cmu01g2188 365 SUPERFAMILY RING/U-box 3 72 - -
Cmu01g2188 365 SUPERFAMILY ARM repeat 88 361 IPR016024 -
Cmu01g2188 365 Pfam U-box domain 6 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu01g2188 365 Gene3D - 87 267 IPR011989 -
Cmu01g2188 365 Gene3D - 268 365 IPR011989 -
Cmu01g2188 365 SMART arm_5 118 158 IPR000225 GO:0005515(InterPro)
Cmu01g2188 365 SMART arm_5 279 320 IPR000225 GO:0005515(InterPro)
Cmu01g2188 365 SMART arm_5 159 199 IPR000225 GO:0005515(InterPro)
Cmu01g2188 365 SMART arm_5 200 241 IPR000225 GO:0005515(InterPro)
Cmu01g2188 365 PANTHER U BOX DOMAIN-CONTAINING 6 361 - -
Cmu01g2188 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu01g2188 365 FunFam RING-type E3 ubiquitin transferase 4 76 - -
Cmu01g2188 365 CDD RING-Ubox_PUB 6 53 IPR045210 -
Cmu01g2188 365 SMART Ubox_2 8 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu01g2188 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2188 Cmu-Chr1:34377144 Cmu11g0608 Cmu-Chr11:6653490 2.50E-45 dispersed
Cmu01g2188 Cmu-Chr1:34377144 Cmu05g2578 Cmu-Chr5:34508135 3.40E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2188 K27970 - csv:101213883 658.292