Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu01g2223 | ATGGGTTGTCCAAACTGGAATTTGTTCATGAAGATCTTAATTGGGCTGCTCTTGGTCTTCATCAACCCTTTTTGCTTTGGAGATACTGACCTCCGCGATGTTGCTGCAATCAATGCATTGTTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCGATACAACTCAGTGGCTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTGGACCAATTTGAGTCAATAATATCAATGGATCTTAGCAACAATCATATTGGAGGGAATATTCCATCTACATTGCCCGCTACACTGAGAAGTTTTTCGTTATCAGCTAATCAATTCACTGGAAGCATTCCCCCTGCATTTGCCTTGCTAACACAACTAATGGACCTGTCACTAAATAATAACCTTCTTACCGGGGTAATACCTGATGTCTTCCAGCTGCTTAATGGCTTGAATAACTTGGACTTGTCAGGCAACAACTTGAGCGGTCAGCTGCCTCCCTCGATGGCTGATTTGTTCTCCCTTGCTACATTGCACTTGCAGAACAATAAACTTTCTGGGATGCTCGACGCTCTACAGGATCTTCCCTTGTCGGATTTAAAAGATGGGAACCCTTTTAATACTACGATAATTTCGTCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTTGCGCCAGTTACTGTGGGACAACCAACCAGACAGACAGGTGCAGGTCAGCCATTGTCGTCAGGGATTCCTGGATCGAATGGAGCAAGGACCTTTTTCTCTGTTAAGCGGATAATTTGGATTGTTATTATTGGCACAGCAATATTATTAGCATTGGGATTCTGTCTTCTCGTGTCGATATGTTTGAAAAGAAGCAAGCATCGAGAAGACACCGAGATTCTTCGTGACAACGCTGATATGGCTTCTAAATATAAGCCTAAACCTACAAAGACCTCGGTTGAAGGTGATGACATGGAGAAAGGTCCAAGGGAGACCACTCTTAAGCCACTTGATAGAGACAGAATGAAGGATAGAATAATGGATTTTACCACCTCAAGGCTACATGATAGACAGGACACAAATGGGAAAAGAAAAGATGCCTCTAATACGAGTTTTCGTAAAGACCTTACGGAGAGTTCGAGCATAAGCATAAATGACTTCCCTGCACCACCTCCTCCCCCTCCTTTTCCACTCCTTTCAACTCAGGAGATTGCAAAACCAATAGTGGCAGCTGAAGTGCCCAGTAGAGTACCTAGAAAACTGAACACAAGTTCTTTAAAAGTTTTCACAATTGCGTCACTTCAGCAGTATACTAATAGTTTCTCTGAGGATAATCTTCTGGGGAGAGGCATGCTTGGCAGTGTCTATAGAGCTGAACTTCCAAGTGGGAGGCTTCTGGCTGTTAAGAAACTGGACGGATCCTCTTCAACTAATTGGAGCGATGATGAATTTCACAACCTTGTGTCTAATATATGCCAAATTCGGCACGATAACATTGTGGAGCTTGTGGGATATTGCGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGTAAAAACGGCACGCTCTATGATGCACTCCATGTCGACAAGGAGATGCATCAGAAGCTTTCATGGAATGTACGTGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTACCATGCACCAAAACTTTAAGTCTGCTAACATTCTCTTAGACAATGAGCTAAAACCACAAGTCTCTGACTCTGGCTTAGCTCGGCTGCTTTCTTCAGCTAGTCAGTCGGCTGCACGATTCCTCCCAGCTCATGGTTATAGTGCTCCTGAATTTGAGTTAGGAACTTACACTTACCAAAGTGATATTTTTAGCTTCGGAGTCGTAATGCTAGAGCTTCTCACCGGTCGGAAGTCCTGTGACCGATCACTGCCTCGAGGAGAGCAATTTCTTGTTCGATGGGCTGTTCCAAGGCTGCATGATATTGATGCATTATCAAGAATGGTCGATCCATCTCTTAATGGCATGTATCCTGTTAAGTCGTTATCGCGCTTTGCTGATATTATTTCCTCCTGTATAATGGTCAAGTTATTGGTTGTGTTCTCCGGAGATGGCGCCTTTATTCCAAATGTAAAAACTTTGGAAGACGTCATTACATTATTGGGCATCATTGAAACAACATATCAGCCTCGTGTATTGGCTGAAGATTTATTTTGGACACATCCTTTTACAAATGTTAGCGACCTCCCATCCTTGAATTTAATTGTTCAACCTCCGCTACAACAATTTGTGTATCGGATAACGACAGATGCTGCATATTGA | 2370 | 43.63 | MGCPNWNLFMKILIGLLLVFINPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPATLRSFSLSANQFTGSIPPAFALLTQLMDLSLNNNLLTGVIPDVFQLLNGLNNLDLSGNNLSGQLPPSMADLFSLATLHLQNNKLSGMLDALQDLPLSDLKDGNPFNTTIISSAPALAPSPFAVAPVTVGQPTRQTGAGQPLSSGIPGSNGARTFFSVKRIIWIVIIGTAILLALGFCLLVSICLKRSKHREDTEILRDNADMASKYKPKPTKTSVEGDDMEKGPRETTLKPLDRDRMKDRIMDFTTSRLHDRQDTNGKRKDASNTSFRKDLTESSSISINDFPAPPPPPPFPLLSTQEIAKPIVAAEVPSRVPRKLNTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYRAELPSGRLLAVKKLDGSSSTNWSDDEFHNLVSNICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPTMHQNFKSANILLDNELKPQVSDSGLARLLSSASQSAARFLPAHGYSAPEFELGTYTYQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGMYPVKSLSRFADIISSCIMVKLLVVFSGDGAFIPNVKTLEDVITLLGIIETTYQPRVLAEDLFWTHPFTNVSDLPSLNLIVQPPLQQFVYRITTDAAY | 789 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 34640195 | 34647411 | - | CmPI595203_01g022230.1 | Cmu01g2223 | 407729 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu01g2223 | 789 | SMART | serkin_6 | 454 | 760 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu01g2223 | 789 | Pfam | Protein tyrosine and serine/threonine kinase | 458 | 654 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu01g2223 | 789 | SUPERFAMILY | Protein kinase-like (PK-like) | 431 | 711 | IPR011009 | - | |
Cmu01g2223 | 789 | SUPERFAMILY | L domain-like | 35 | 216 | - | - | |
Cmu01g2223 | 789 | Pfam | Leucine Rich Repeat | 98 | 116 | IPR001611 | GO:0005515(InterPro) | |
Cmu01g2223 | 789 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 532 | 713 | - | - | |
Cmu01g2223 | 789 | Gene3D | Phosphorylase Kinase; domain 1 | 421 | 531 | - | - | |
Cmu01g2223 | 789 | Gene3D | Ribonuclease Inhibitor | 39 | 234 | IPR032675 | - | |
Cmu01g2223 | 789 | MobiDBLite | consensus disorder prediction | 319 | 407 | - | - | |
Cmu01g2223 | 789 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 3 | 30 | 232 | - | - | |
Cmu01g2223 | 789 | Pfam | Leucine rich repeat | 119 | 178 | IPR001611 | GO:0005515(InterPro) | |
Cmu01g2223 | 789 | Gene3D | Transferase(Phosphotransferase) domain 1 | 532 | 712 | - | - | |
Cmu01g2223 | 789 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 | 33 | 709 | IPR046959 | - | |
Cmu01g2223 | 789 | ProSiteProfiles | Protein kinase domain profile. | 454 | 760 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu01g2223 | 789 | MobiDBLite | consensus disorder prediction | 319 | 385 | - | - | |
Cmu01g2223 | 789 | FunFam | Protein STRUBBELIG-RECEPTOR FAMILY 8 | 423 | 531 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g2217 | Cmu-Chr1:34583962 | Cmu01g2223 | Cmu-Chr1:34640195 | 5.00E-16 | dispersed | |
Cmu01g2219 | Cmu-Chr1:34596275 | Cmu01g2223 | Cmu-Chr1:34640195 | 1.80E-15 | dispersed | |
Cmu01g2223 | Cmu-Chr1:34640195 | Cmu07g1401 | Cmu-Chr7:29264052 | 3.60E-97 | dispersed | |
Cmu01g2222 | Cmu-Chr1:34630285 | Cmu01g2223 | Cmu-Chr1:34640195 | 6.00E-13 | tandem | |
Cmu01g2223 | Cmu-Chr1:34640195 | Cmu10g2501 | Cmu-Chr10:31663773 | 5.20E-56 | wgd | |
Cmu01g2223 | Cmu-Chr1:34640195 | Cmu02g0127 | Cmu-Chr2:1354939 | 2.10E-134 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75257 | PF07714 | PK_Tyr_Ser-Thr | 1.20E-33 | CL0016 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu01g2223 | - | - | - | 0.0 |