Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2223 ATGGGTTGTCCAAACTGGAATTTGTTCATGAAGATCTTAATTGGGCTGCTCTTGGTCTTCATCAACCCTTTTTGCTTTGGAGATACTGACCTCCGCGATGTTGCTGCAATCAATGCATTGTTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCGATACAACTCAGTGGCTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTGGACCAATTTGAGTCAATAATATCAATGGATCTTAGCAACAATCATATTGGAGGGAATATTCCATCTACATTGCCCGCTACACTGAGAAGTTTTTCGTTATCAGCTAATCAATTCACTGGAAGCATTCCCCCTGCATTTGCCTTGCTAACACAACTAATGGACCTGTCACTAAATAATAACCTTCTTACCGGGGTAATACCTGATGTCTTCCAGCTGCTTAATGGCTTGAATAACTTGGACTTGTCAGGCAACAACTTGAGCGGTCAGCTGCCTCCCTCGATGGCTGATTTGTTCTCCCTTGCTACATTGCACTTGCAGAACAATAAACTTTCTGGGATGCTCGACGCTCTACAGGATCTTCCCTTGTCGGATTTAAAAGATGGGAACCCTTTTAATACTACGATAATTTCGTCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTTGCGCCAGTTACTGTGGGACAACCAACCAGACAGACAGGTGCAGGTCAGCCATTGTCGTCAGGGATTCCTGGATCGAATGGAGCAAGGACCTTTTTCTCTGTTAAGCGGATAATTTGGATTGTTATTATTGGCACAGCAATATTATTAGCATTGGGATTCTGTCTTCTCGTGTCGATATGTTTGAAAAGAAGCAAGCATCGAGAAGACACCGAGATTCTTCGTGACAACGCTGATATGGCTTCTAAATATAAGCCTAAACCTACAAAGACCTCGGTTGAAGGTGATGACATGGAGAAAGGTCCAAGGGAGACCACTCTTAAGCCACTTGATAGAGACAGAATGAAGGATAGAATAATGGATTTTACCACCTCAAGGCTACATGATAGACAGGACACAAATGGGAAAAGAAAAGATGCCTCTAATACGAGTTTTCGTAAAGACCTTACGGAGAGTTCGAGCATAAGCATAAATGACTTCCCTGCACCACCTCCTCCCCCTCCTTTTCCACTCCTTTCAACTCAGGAGATTGCAAAACCAATAGTGGCAGCTGAAGTGCCCAGTAGAGTACCTAGAAAACTGAACACAAGTTCTTTAAAAGTTTTCACAATTGCGTCACTTCAGCAGTATACTAATAGTTTCTCTGAGGATAATCTTCTGGGGAGAGGCATGCTTGGCAGTGTCTATAGAGCTGAACTTCCAAGTGGGAGGCTTCTGGCTGTTAAGAAACTGGACGGATCCTCTTCAACTAATTGGAGCGATGATGAATTTCACAACCTTGTGTCTAATATATGCCAAATTCGGCACGATAACATTGTGGAGCTTGTGGGATATTGCGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGTAAAAACGGCACGCTCTATGATGCACTCCATGTCGACAAGGAGATGCATCAGAAGCTTTCATGGAATGTACGTGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTACCATGCACCAAAACTTTAAGTCTGCTAACATTCTCTTAGACAATGAGCTAAAACCACAAGTCTCTGACTCTGGCTTAGCTCGGCTGCTTTCTTCAGCTAGTCAGTCGGCTGCACGATTCCTCCCAGCTCATGGTTATAGTGCTCCTGAATTTGAGTTAGGAACTTACACTTACCAAAGTGATATTTTTAGCTTCGGAGTCGTAATGCTAGAGCTTCTCACCGGTCGGAAGTCCTGTGACCGATCACTGCCTCGAGGAGAGCAATTTCTTGTTCGATGGGCTGTTCCAAGGCTGCATGATATTGATGCATTATCAAGAATGGTCGATCCATCTCTTAATGGCATGTATCCTGTTAAGTCGTTATCGCGCTTTGCTGATATTATTTCCTCCTGTATAATGGTCAAGTTATTGGTTGTGTTCTCCGGAGATGGCGCCTTTATTCCAAATGTAAAAACTTTGGAAGACGTCATTACATTATTGGGCATCATTGAAACAACATATCAGCCTCGTGTATTGGCTGAAGATTTATTTTGGACACATCCTTTTACAAATGTTAGCGACCTCCCATCCTTGAATTTAATTGTTCAACCTCCGCTACAACAATTTGTGTATCGGATAACGACAGATGCTGCATATTGA 2370 43.63 MGCPNWNLFMKILIGLLLVFINPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPATLRSFSLSANQFTGSIPPAFALLTQLMDLSLNNNLLTGVIPDVFQLLNGLNNLDLSGNNLSGQLPPSMADLFSLATLHLQNNKLSGMLDALQDLPLSDLKDGNPFNTTIISSAPALAPSPFAVAPVTVGQPTRQTGAGQPLSSGIPGSNGARTFFSVKRIIWIVIIGTAILLALGFCLLVSICLKRSKHREDTEILRDNADMASKYKPKPTKTSVEGDDMEKGPRETTLKPLDRDRMKDRIMDFTTSRLHDRQDTNGKRKDASNTSFRKDLTESSSISINDFPAPPPPPPFPLLSTQEIAKPIVAAEVPSRVPRKLNTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYRAELPSGRLLAVKKLDGSSSTNWSDDEFHNLVSNICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPTMHQNFKSANILLDNELKPQVSDSGLARLLSSASQSAARFLPAHGYSAPEFELGTYTYQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGMYPVKSLSRFADIISSCIMVKLLVVFSGDGAFIPNVKTLEDVITLLGIIETTYQPRVLAEDLFWTHPFTNVSDLPSLNLIVQPPLQQFVYRITTDAAY 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34640195 34647411 - CmPI595203_01g022230.1 Cmu01g2223 407729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2223 789 SMART serkin_6 454 760 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2223 789 Pfam Protein tyrosine and serine/threonine kinase 458 654 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2223 789 SUPERFAMILY Protein kinase-like (PK-like) 431 711 IPR011009 -
Cmu01g2223 789 SUPERFAMILY L domain-like 35 216 - -
Cmu01g2223 789 Pfam Leucine Rich Repeat 98 116 IPR001611 GO:0005515(InterPro)
Cmu01g2223 789 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 532 713 - -
Cmu01g2223 789 Gene3D Phosphorylase Kinase; domain 1 421 531 - -
Cmu01g2223 789 Gene3D Ribonuclease Inhibitor 39 234 IPR032675 -
Cmu01g2223 789 MobiDBLite consensus disorder prediction 319 407 - -
Cmu01g2223 789 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 232 - -
Cmu01g2223 789 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515(InterPro)
Cmu01g2223 789 Gene3D Transferase(Phosphotransferase) domain 1 532 712 - -
Cmu01g2223 789 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 33 709 IPR046959 -
Cmu01g2223 789 ProSiteProfiles Protein kinase domain profile. 454 760 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2223 789 MobiDBLite consensus disorder prediction 319 385 - -
Cmu01g2223 789 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 423 531 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2223 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2217 Cmu-Chr1:34583962 Cmu01g2223 Cmu-Chr1:34640195 5.00E-16 dispersed
Cmu01g2219 Cmu-Chr1:34596275 Cmu01g2223 Cmu-Chr1:34640195 1.80E-15 dispersed
Cmu01g2223 Cmu-Chr1:34640195 Cmu07g1401 Cmu-Chr7:29264052 3.60E-97 dispersed
Cmu01g2222 Cmu-Chr1:34630285 Cmu01g2223 Cmu-Chr1:34640195 6.00E-13 tandem
Cmu01g2223 Cmu-Chr1:34640195 Cmu10g2501 Cmu-Chr10:31663773 5.20E-56 wgd
Cmu01g2223 Cmu-Chr1:34640195 Cmu02g0127 Cmu-Chr2:1354939 2.10E-134 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu02g0127 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.6e-205 711.1
Cmu01g2223 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 3.0e-141 499.6
Cmu09g0141 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 3.4e-92 336.7
Cmu10g2475 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Cmu08g0448 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Cmu07g1401 . 166 855 Strubbelig Receptor Gene Family AT1G78980 50.9 6.3e-146 515.0
Cmu09g0141 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 5.7e-123 438.7
Cmu08g0448 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.6e-148 521.5
Cmu01g0940 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.2 1.4e-84 311.2
Cmu10g2475 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Cmu02g0127 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.6e-205 711.1
Cmu01g2223 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 3.0e-141 499.6
Cmu09g0141 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 3.4e-92 336.7
Cmu08g0448 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.6e-148 521.5
Cmu08g0448 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Cmu07g1401 . 166 855 Strubbelig Receptor Gene Family AT1G78980 50.9 6.3e-146 515.0
Cmu09g0141 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 5.7e-123 438.7
Cmu07g1401 . 161 855 Strubbelig Receptor Gene Family AT1G53730 60.3 4.1e-201 698.4
Cmu09g0141 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.7 5.8e-187 651.4
Cmu08g0448 . 20 693 Strubbelig Receptor Gene Family AT1G53730 50.4 1.3e-154 543.9
Cmu01g0940 . 7 689 Strubbelig Receptor Gene Family AT1G53730 50.9 4.5e-147 518.8
Cmu07g1401 . 161 850 Strubbelig Receptor Gene Family AT3G14350 56.8 1.5e-179 626.7
Cmu09g0141 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.6 2.6e-168 589.3
Cmu01g0940 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.2 4.2e-177 618.2
Cmu07g1401 . 534 862 Strubbelig Receptor Gene Family AT4G22130 63.4 4.8e-120 428.7
Cmu09g0141 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.9 2.9e-117 419.5
Cmu02g0127 . 485 796 Strubbelig Receptor Gene Family AT4G22130 58.8 6.0e-107 385.2
Cmu08g0448 . 360 707 Strubbelig Receptor Gene Family AT4G22130 52.4 1.2e-99 360.9
Cmu10g2475 . 387 709 Strubbelig Receptor Gene Family AT4G22130 51.7 9.4e-92 334.7
Cmu01g2223 . 442 709 Strubbelig Receptor Gene Family AT4G22130 60.0 1.4e-90 330.9
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75257 PF07714 PK_Tyr_Ser-Thr 1.20E-33 CL0016 Cmu PK