Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2250 ATGGACGAAGAGGCTAATTCTTGGCTTAGGAGAACGAAGTTTTCTCACACAGTTTATCATCGATGGGACTCATTAAGATTAAACTCAGTTCCTTTCATCGTCGAACCATCTCGTAATTCTGGCTTGAAATCGAGGCCTACATCAGCTTCCTCCACTCAGAAACCAAATCCTGATATTTCGAAGATTCAGCGAAGCTTCATATCCAATAAACAGAGGTCTCTGTCTCCTCTTCCCGAGAGCAATCTCTCTGAAGTTTTCAAGGAAGCGAAATCCGACAGTAAGAGATTCTCAACTCCAACTCCTCGACTTAGAGAACGAACTAAGGAATTCAAGAACAAGCTATTCAATAAGGACCCGCAAGATTCAAAATCGGCCGATTCCAAGTCATCGTCGAATACCAGTCCCCTGAAACTCCTATCTTCGGGGAAAGGGGGTGATAAGTCAAAGTTCCGGAAAGATTCTTCCTGGACCAAATACTTCGATTCCGGTGGAGGAAAAGTCACCGCGGTCGAAACAGCCGAAGACTGGACTGTTGATCTCTCCAAGTTGTTTGTTGGGTTAAGGTTTGCTCATGGAGCTCACAGTCGTCTTTATCATGGAAAATACAATGATGAACCTGTTGCTGTTAAAATTATTAGGGTGCCCGAGGATGACGAAAATGGAACGCTTGCTTCTCGATTGGAGAAACAATTTACCAGAGAAGTTACCCTTTTATCTCGTCTCCATCATCCGAATGTTATAAAGTTTGTAGCTGCGAGTAGGAACCCACCTGTATACTGTGTCATTACTGAATATTTGTCCCAAGGATCATTACGGGCATACTTACACAAACTTGAGCACCAATCCCTCCCTTTGCAAAAACTAATTGAATTTGCTTTAGATGTCGCTCGTGGCATGGAATACCTTCACTCACAAGGCGTAATTCATCGGGATCTTAAGCCTGAGAATGTTCTTATTGATGAAGACTTCCACTTGAAAATTGCAGATTTTGGTATAGCTTGTCCTGAGGCCTTTTTCGACCCATTAGCTGATGATCCCGGAACTTATCGGTGGATGGCACCGGAGATGATCAAACATAAACCTTGTAGTCGAAAGGTCGATGTGTACAGCTTTGGGCTTATGTTGTGGGAAATGGTGTCTGGTGCAATTCCATACGAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTGAATAAGAATCTTAGGCCTGTTATTTCAAGTGATTGTCCATTGGCAATGCGGGCTTTAATCGAGCAATGTTGGTCCCTACAACCGGACAAGAGACCCGATTTCTGGCAGATTGTGAAGGTACTAGAGCAATTCAAATCTTCGCTTGCCCGTGATGGGACACTGAATTTATTAGGTAACCCTCTGTCTAGTTTCCAAGACCATAAGAAAGGGCTTCTCCATTGGATTCAAAAGCTTGGCCCCCTGCATCCTGAAACCTCGCCCTCTCCTGTGCCGAAACCGAAATTCTCTGGTAGGCCTGTCACATGGGGGGTGGTTGAGTCCAGTCAAGGGAAAAGAGAAGTGTTGAAGCAATGGGGGGTTATGAGCTTAGGAGCTGATTTGTCAAAGATGGAACCTTTGAATGTGGAAAATGCACCGCCATTGGAGACCTTCCACACAAGCCTCATCTCATCTCTTCCTTTATAA 1659 44.48 MDEEANSWLRRTKFSHTVYHRWDSLRLNSVPFIVEPSRNSGLKSRPTSASSTQKPNPDISKIQRSFISNKQRSLSPLPESNLSEVFKEAKSDSKRFSTPTPRLRERTKEFKNKLFNKDPQDSKSADSKSSSNTSPLKLLSSGKGGDKSKFRKDSSWTKYFDSGGGKVTAVETAEDWTVDLSKLFVGLRFAHGAHSRLYHGKYNDEPVAVKIIRVPEDDENGTLASRLEKQFTREVTLLSRLHHPNVIKFVAASRNPPVYCVITEYLSQGSLRAYLHKLEHQSLPLQKLIEFALDVARGMEYLHSQGVIHRDLKPENVLIDEDFHLKIADFGIACPEAFFDPLADDPGTYRWMAPEMIKHKPCSRKVDVYSFGLMLWEMVSGAIPYEDMTPIQAAFAVVNKNLRPVISSDCPLAMRALIEQCWSLQPDKRPDFWQIVKVLEQFKSSLARDGTLNLLGNPLSSFQDHKKGLLHWIQKLGPLHPETSPSPVPKPKFSGRPVTWGVVESSQGKREVLKQWGVMSLGADLSKMEPLNVENAPPLETFHTSLISSLPL 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34863101 34866631 - CmPI595203_01g022500.1 Cmu01g2250 407756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2250 552 MobiDBLite consensus disorder prediction 125 139 - -
Cmu01g2250 552 MobiDBLite consensus disorder prediction 40 80 - -
Cmu01g2250 552 PRINTS Tyrosine kinase catalytic domain signature 301 319 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2250 552 PRINTS Tyrosine kinase catalytic domain signature 366 388 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2250 552 PRINTS Tyrosine kinase catalytic domain signature 347 357 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2250 552 PRINTS Tyrosine kinase catalytic domain signature 410 432 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2250 552 PRINTS Tyrosine kinase catalytic domain signature 263 276 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2250 552 PANTHER SERINE-THREONINE PROTEIN KINASE 80 441 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cmu01g2250 552 FunFam Kinase suppressor of Ras 1 172 266 - -
Cmu01g2250 552 MobiDBLite consensus disorder prediction 85 124 - -
Cmu01g2250 552 Pfam Protein tyrosine and serine/threonine kinase 190 439 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2250 552 CDD STKc_MAP3K-like 190 439 - -
Cmu01g2250 552 MobiDBLite consensus disorder prediction 37 151 - -
Cmu01g2250 552 SMART serkin_6 183 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2250 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2250 552 Gene3D Phosphorylase Kinase; domain 1 171 267 - -
Cmu01g2250 552 FunFam serine/threonine-protein kinase HT1 268 457 - -
Cmu01g2250 552 Gene3D Transferase(Phosphotransferase) domain 1 268 459 - -
Cmu01g2250 552 SUPERFAMILY Protein kinase-like (PK-like) 168 439 IPR011009 -
Cmu01g2250 552 ProSiteProfiles Protein kinase domain profile. 183 443 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2100 Cmu-Chr1:33827041 Cmu01g2250 Cmu-Chr1:34863101 1.70E-89 dispersed
Cmu01g2250 Cmu-Chr1:34863101 Cmu11g1140 Cmu-Chr11:21537769 1.20E-78 dispersed
Cmu01g2250 Cmu-Chr1:34863101 Cmu02g1061 Cmu-Chr2:20577061 5.30E-20 wgd
Cmu01g2250 Cmu-Chr1:34863101 Cmu03g1410 Cmu-Chr3:9349319 3.30E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75258 PF07714 PK_Tyr_Ser-Thr 4.00E-60 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2250 - - - 0.0