Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2254 ATGGACGACCACCACAATCCCCACCACCACCACCACCACCACCACCACCATGAACTCCCCCCATTCCCCTCCGCCGCCGCCATTCTCCACTCTCCTCCTCCTCCTCCTCCTCAAAATTCATGTTATCTCCCACCTAGTCTTTCTCAAACTTGCTTGGGATTCTCCTCCTCCGCCCCACAATCCTATTTTTACTCAAATCCTCCTCCTCTACATGAACAACTTCCATCCCATTTCCCACCTTCTTCCACCTTCCTCACTTATGGTTTCAATGAGCCAACTAATTCTCTATTCCCTAAAGATGAAGGAAGAAGGGCTATGGATGCTTGGAGTACTAAAGTCGCTCGTACCAACCGAAGACTCGCCCGCCAAAGAACCCTTACTTTAACCCGAACCACTTCTTCTTCCTCTTCTGCAGCTTATAATGGTTGTTATAATGATGAATATTCTAAGGGCTTAACAATAACCCACTTCCCAAACACTGATCCCTCTCACAATAATCGCAATCTTTTTACCTTTTGCACTCCAGATAACAAGATTTTGAGAATGCTGCTGAAGAAGGAGCTGAAGAACAGTGATGTTGGATCTTTGGGCAGGATTGTCCTCCCCAAGAGGGAGGCAGAAGAGAACCTTCCATTTCTCACTGATAAGGAAGGTATCCAAATTGTGGTGAGAGATGTGAACTCAATCAGAAAATGGACCATGAAATACAAGTACTGGGCAAACAACAGAAGTAGAATGTATGTTCTGGAGAACACAGGGGATTTCGTTAGACAAAATGGTCTGTTGATGGGAGATTCAATGACACTATACGAGGATGACTGCAAGAACCTCTACGTGGCGGTTGAAAAAGGTGAGAATCATTCGAGAATGGAAGAAAATAACAAGCAGCAGCAGCAGCAGCAGCAGCAGTGTGGTAATTTGTCAAACATGGAAATTAAAGACGAAGAAGAAGATGCTTCATTAGCTTTGTTGATCGAAGAGCTCAAACACAAAGCCGACGACGACCCCCACGCGCCGCCCTGCTGCAACGACTATTCCTACTTCACCGCTGCTACTATGATGGGAGGTGCTACAATAAAAGGGAATTATAATAACATTAATAATAACAATAATGCGACTAATACTAATTACAAGGAAGTAATGGAGGATCTGCAGGGGATTAATAACAACAACAACAACAATAATAATAATAATAATAATAATGGGAATGGGTTTGAAGATTGCTTTGGAGGGCTTGATACTCTGCCGGAAGTAACTGGATTCAAGTTCCCTCTCTTTGACTATTTCAGCAACAATGATAGAACGTGA 1308 43.65 MDDHHNPHHHHHHHHHHELPPFPSAAAILHSPPPPPPQNSCYLPPSLSQTCLGFSSSAPQSYFYSNPPPLHEQLPSHFPPSSTFLTYGFNEPTNSLFPKDEGRRAMDAWSTKVARTNRRLARQRTLTLTRTTSSSSSAAYNGCYNDEYSKGLTITHFPNTDPSHNNRNLFTFCTPDNKILRMLLKKELKNSDVGSLGRIVLPKREAEENLPFLTDKEGIQIVVRDVNSIRKWTMKYKYWANNRSRMYVLENTGDFVRQNGLLMGDSMTLYEDDCKNLYVAVEKGENHSRMEENNKQQQQQQQQCGNLSNMEIKDEEEDASLALLIEELKHKADDDPHAPPCCNDYSYFTAATMMGGATIKGNYNNINNNNNATNTNYKEVMEDLQGINNNNNNNNNNNNNNGNGFEDCFGGLDTLPEVTGFKFPLFDYFSNNDRT 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34889187 34892806 - CmPI595203_01g022540.1 Cmu01g2254 407760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2254 435 Gene3D - 173 299 IPR015300 -
Cmu01g2254 435 MobiDBLite consensus disorder prediction 1 42 - -
Cmu01g2254 435 SMART B3_2 184 285 IPR003340 GO:0003677(InterPro)
Cmu01g2254 435 MobiDBLite consensus disorder prediction 285 306 - -
Cmu01g2254 435 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 124 310 IPR044800 GO:0003700(InterPro)
Cmu01g2254 435 ProSiteProfiles B3 DNA-binding domain profile. 184 285 IPR003340 GO:0003677(InterPro)
Cmu01g2254 435 Pfam B3 DNA binding domain 186 281 IPR003340 GO:0003677(InterPro)
Cmu01g2254 435 MobiDBLite consensus disorder prediction 26 42 - -
Cmu01g2254 435 SUPERFAMILY DNA-binding pseudobarrel domain 183 281 IPR015300 -
Cmu01g2254 435 Coils Coil 377 397 - -
Cmu01g2254 435 CDD B3_DNA 183 279 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2254 Cmu-Chr1:34889187 Cmu09g0888 Cmu-Chr9:8680861 8.70E-29 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5613 PF02362 B3 7.30E-16 CL0405 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2254 K09287 - csv:105436043 511.531