Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2260 ATGGCTCTGAATCTCAGACTCCATACACTCATATTCCTTCTCCTTCTCTTCTCCTTCTGTACTCCATCATTTTCAGATTCAGTTCCATCTCCCAATTCCCAATGCGAAGCTCAGCTGCAACAAGGCTGCCATGACAGAGCCGAGGCCCTCAAACTCAAGCTCATCGCCATCGCTTCCATTTTAGTCGCGAGCATGATCGGCGTTTGTCTTCCCCTCTTCTCCCGCGCCGTGCCGGTGCTTCAACCAGAGAGAAAGCCCTTCGCAATCGTTAAGGCATTTGCCTCCGGTGTGATTCTAGCCACTGGATATATGCACGTTCTCCCCGATTCCTTCGATTGCTTGACATCCCCCTGTTTGCCAGAGAATCCATGGCGGAAATTCCCTTTCTCAACATTCATAGCAATGCTTTCCGCTGTTATGACTCTAATGTTGGACTCGTTTTCAATGAGTCGCTACAATAAAAAGTTGATGCAGGATCAAGAAGCCGCAGACGAGGAGGAGAACGAGGATCGCAAGGAAATCAGTGACAATTTTGGGAAAGAAGAAGGAATAATCGAGAAAAAACTTGGTTCGCAATTGCTACGGTACCGTGTTGTTGCTCAGTTATTAGAAGCGGGGATCGTTGTGCATTCGGTGGTGATAGGGCTTTCAATGGGGGCTTCAGATAATCCGTGTACCATAAGACCGCTCATCGCTGCTCTGTGCTTTCATCAGCTGTTTGAAGGGATGGGGCTTGGAGGGTGCATTTTGCAGGCGGAATATAGGTTGAAGATGAAGGCGATAATGGTGTTTTTCTTCTCGGTTACAACGCCGTTTGGAATAGCATTGGGCATTGGGTTGTCGAATGTGTACAGTGAGAACAGTCCCACGGCTCTTATAGTTGTGGGAATTTTGAATGCTTTATCTGCTGGGTTGTTGAATTATATGGCATTGGTTGATTTGTTGGCGCATGATTTCATGGGGCCTAAATTGCAAGCCGATATCAAGCTGCAAATATGGGCTTATGTTGCTGTTTTGTTCGGCGTTGGTGGCATGTCATTGATGGCAAAATGGGCTTAG 1059 47.21 MALNLRLHTLIFLLLLFSFCTPSFSDSVPSPNSQCEAQLQQGCHDRAEALKLKLIAIASILVASMIGVCLPLFSRAVPVLQPERKPFAIVKAFASGVILATGYMHVLPDSFDCLTSPCLPENPWRKFPFSTFIAMLSAVMTLMLDSFSMSRYNKKLMQDQEAADEEENEDRKEISDNFGKEEGIIEKKLGSQLLRYRVVAQLLEAGIVVHSVVIGLSMGASDNPCTIRPLIAALCFHQLFEGMGLGGCILQAEYRLKMKAIMVFFFSVTTPFGIALGIGLSNVYSENSPTALIVVGILNALSAGLLNYMALVDLLAHDFMGPKLQADIKLQIWAYVAVLFGVGGMSLMAKWA 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34932495 34933553 - CmPI595203_01g022600.1 Cmu01g2260 407766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2260 352 Pfam ZIP Zinc transporter 50 349 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Cmu01g2260 352 PANTHER ZINC/IRON TRANSPORTER 47 351 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
Cmu01g2260 352 NCBIfam ZIP zinc/iron transport family 35 352 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
Cmu01g2260 352 Coils Coil 149 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0889 Cmu-Chr1:11132283 Cmu01g2260 Cmu-Chr1:34932495 1.30E-107 dispersed
Cmu01g2260 Cmu-Chr1:34932495 Cmu11g1679 Cmu-Chr11:29064006 3.30E-79 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2260 K14709 - csv:101204028 545.043