Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2272 ATGGAGTCCCAGTTGCTCTCACGCTCCACTTCCTTCGCCGGCGGCATTCCCACTCTCCGCAAGTTGCACAGAGACACCATCACTAACAACAACCATGTCGCCTTCGTCCACACCAGGCCCATCGCCGAGGGAGCCAACTTGATCTGGGGAAGACAACTCCGCCCCTCTTTACTGCTCGATACGCCGCATCTACTCTCCGCTAAACGGGAGACGATTCGCCCTACCTTTGCGGCGGCCTCCTCTTCTTCCGCCGGAGGTAGCGATTCCGCCGGGGAGGCGAAGGTTGCTCCGGTGGGGTTCTTAGAGAAGTATCCGGCGTTGGTCACCGGATTCTTCTTCTTTATGTGGTACTTCCTGAACGTGATTTTCAATATCCTCAACAAGAAGATATATAATTACTTCCCCTATCCATATTTTGTGTCGGTGATCCATTTATTGGTTGGGGTGGTGTACTGTTTGATAAGCTGGGCTGTGGGTCTTCCTAAGCGAGCACCTATTGATTCAACCCTCCTGAAGTTGCTGATCCCTGTAGCTTTCTGTCATGCACTTGGCCATGTCACTAGCAATGTCTCATTCGCGGCTGTTGCTGTCTCATTCACTCATACAATCAAAGCTCTGGAACCGTTCTTTAACGCTGCCGCTTCTCAATTCATTTTGGGGCAACCCATTCCCATTACCTTGTGGCTTTCATTGGCTCCCGTTGTCATTGGTGTGTCAATGGCATCCTTGACTGAGCTTTCATTTAACTGGACTGGTTTCATTAGTGCTATGATTTCCAATATCTCCTTTACCTACAGAAGTATTTATTCAAAGAAAGCCATGACTGACATGGACAGCACCAACGTTTATGCCTACATTTCGATTATTGCTCTCCTTTTCTGCATTCCACCTGCTGTAATTGTGGAAGGGCCTCAACTGCTGAAGTTTGGTTTCAATGATGCCATAGCCAAAGTTGGTCTAACCAAATTCGTTTCAGATCTCTTCTGGGTAGGGATGTTTTATCATCTTTACAATCAGTTAGCAACCAACACCTTAGAGAGGGTGGCACCACTTACCCATGCAGTTGGAAATGTGCTGAAACGTGTATTTGTGATTGGATTCTCCATCATTATCTTCGGTAACAAAATCTCTACACAGACTGGTATTGGAACCGGCATTGCAATTGCAGGAGTAGCACTTTACTCTTACATCAAGGCTAAGATGGAAGAAGAGAAACGATTTTATTGTTTGGACAGCGAACAAAGGTGGCTTGAAGAAGCATGGGATGGAGGGTTAAGGCTTGACCGTTGTGGATATTTCAAGCAAGTGGGCCAATCCCAATTGGTCTCACTAAAGAGGCGGTTGGGCCCTGGCTTCTACTCGACCTCAACTCAGCCTCGACCTCCTAGGCCAAGCTAA 1398 47.71 MESQLLSRSTSFAGGIPTLRKLHRDTITNNNHVAFVHTRPIAEGANLIWGRQLRPSLLLDTPHLLSAKRETIRPTFAAASSSSAGGSDSAGEAKVAPVGFLEKYPALVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLLVGVVYCLISWAVGLPKRAPIDSTLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQPIPITLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNVYAYISIIALLFCIPPAVIVEGPQLLKFGFNDAIAKVGLTKFVSDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIIIFGNKISTQTGIGTGIAIAGVALYSYIKAKMEEEKRFYCLDSEQRWLEEAWDGGLRLDRCGYFKQVGQSQLVSLKRRLGPGFYSTSTQPRPPRPS 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35029488 35034142 - CmPI595203_01g022720.1 Cmu01g2272 407778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2272 465 SUPERFAMILY Multidrug resistance efflux transporter EmrE 151 244 - -
Cmu01g2272 465 PANTHER SOLUTE CARRIER FAMILY 35 100 399 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Cmu01g2272 465 Pfam Triose-phosphate Transporter family 108 395 IPR004853 -
Cmu01g2272 465 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 107 405 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cmu01g2272 465 SUPERFAMILY Multidrug resistance efflux transporter EmrE 324 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2272 Cmu-Chr1:35029488 Cmu05g2428 Cmu-Chr5:33382384 1.20E-148 dispersed
Cmu01g2272 Cmu-Chr1:35029488 Cmu01g2155 Cmu-Chr1:34178698 1.70E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2272 K15283 - csv:101220728 743.806