Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2274 ATGCCTTTATGGCCCTTCCTCTTCCTCTTCTGTTTCCCTCTGTTTTCCTTCTCCCTCAACCAAGAGGGTTATGTTCTCTACACCTTTAAGCGCTCCGTTGAGGATCGTAACAATGTCTTCTCCACTTGGCACGAAGCCGACCCCGATCCCTGTTCATGGGATGGCATCACCTGCGACGCCCATCATCACGTTATTTCTGTTGATCTCTCTAGCTCTCGTATTTCTGCTTCTTTCCCTCTTCAACTCTGTAAGCTTCCGCATCTCCTCTACCTTTCTCTTTACAACAATACCTTCCATTCCCTTCTTCCCGCCGGGATTTCCAATTGTAGCAGCCTCGAGTTTCTTGACCTTAGTCAAAATCTCCTCACCGGTCCTCTGCCTCCCTCCATTGCTGATTTGCCCAATATCCGATACTTGGATTTGTCTGGCAACAATTTCTCCGGCGAAATACCACCCTCCTTCGGTCGGTTTCGGAAACTTGAGGCGTTTTCAATTGTTTTGAATCTTGTGAGTGGTACAATTCCTCCGTTTCTTGGTAACATTACTACTCTTAGGATGTTGAATATGTCTTACAACTCGTTTTCGCCCGGAAGAATCCCGCCGGAGCTGGGTAGTCTGGTGAATCTTGAGGTTCTTTGGTTGACGGCTTGTAATTTAGTGGGGGAGATTCCTGAGTCGCTGGTAGGTCTGGAGCAACTTGTTCTTCTAGATTTGAGCATTAACAATCTTACTGGGCCGTTCCCGCGGGCGCTGACGGAGTTAACCCACGTGACCCAGATTGAGTTATTTGGCAATAAGTTAACCGGCGTGTTACCGAATGAGTTTTCGAAACTCAAGTCGCTGCGGTTGTTCGACATCTCGATGAATAATCTCGCTGGGCCAATTCCGGGTAGCTTGTTTGAGTTGCCGCTTGAAAGTCTTAATGCGTTTGAGAATAATTTCGAGGGGAGCTTGCCGGAAAGCATAGGGGAGTCGAGGACTTTGAGAGAGATAAAGCTATTTGCGAACAGATTCACAGGGTCGTTACCAACACATTTGGGGAAATATTCACCTCTAGAATCGTTGGACATTTCGGACAACTTCTTTTCCGGCAGGCTCCCCGAGAACTTGTGTGAGAAGGGGGCATTGATAGAGATAATGTTGATCAACAACCTGTTTTCCGGCGAACTCCCGTCGAGTCTTGGTAATTGTCAGAGTCTGACCAGGATGCGATTAGGGAACAACAATTTTACGGGTTCTGTACCAGAAAATGTATGGGGACTTTCAGATGTTGCTCTTATGGAACTTGCAAACAACTCCTTCTCTGGCCCAATCTCAAAGAAAATAGCCAACGCCAAGATGCTGAATTTGCTTCTTATTTCTAATAACAATTTCTCAGGAACAATTCCAGAGGAGATTGGTTCTTTGGAGAATATGGTAGAGTTTTCCGCCGACCATAACAAGTTCATAGGAAATATCCCTGAAAACCTTACAAAAATGGATCGACTTGCTAAGTTAGATCTTCAAAACAACAGACTTTCGGGGTTGCTCAACTACAGGCTTGATGCCTGGGAGAGGCTGAATGAGCTCAATCTGGCCAATAATAACTTCTCTGGGCCAATTCCCCCGGAAATTGCTAGCTTGCCAGTGCTTAATTACCTCGATCTTTCAGGCAATCAATTTTCTGGGGAAATCCCAAATGGGTTACAGAATTTGAACCTCAATGTTCTGAATCTGTCATACAACCAATTAACTGGGACACTTCCTTCCTATTTCGAGAGATCAATGTACAAAAATAGCTTTCTAGGCAATCCTGATTTATGTAGGGAGGAAAACGATGCGTGTCATACAGTTCAGTCTACAAGAAATGGAGGAGGAGGAGGAGGAGGAGGTTGTGATGAGGGAGGAGGTTGCATTTGGCTGCTGCGATCCTTCTTTGTATTTGCAGGTTTAATTTTCTTTGTGGGAGTGGTTCTATTCCACGTCAAGTACAGGACATTCGTCAAGGCAAGAAGTCTCAACATCAAATCAAAATGGACAATGATATCGTTCCAAAAGCTCTCTTTTGGTGAGGACGAGATTGTGGGTTCCCTAGATGAACACAATGTGATAGGCAGTGGAGGCTCTGGCCTAGTTTACAAGGTTGCTCTCGCCAATGGCGAAACCATTGCAGTTAAGAAACTTTGGCCCGAGCTGCCCAATGACTGCCCGAGCATCGATCTGGAGAAAAATTGGACTGAAATTAATGCTTTTGATGCAGAAGTGAAGACTTTGGGTGAAATCAGGCACAAAAACATAGTGAAACTTTTGTGTTGTTGTACCAATGGAGACTGCAAGCTTTTGGTCTTTGAATACATGCCTAATGGGAGCTTGGGTGATATGCTTCATGGTAGTAGAAGTGAGTTATTGGATTGGCCAACACGATACAAGATAGCCTTGGATGCTGCTGAGGGGCTTTCTTATCTTCATCATGATTGTGTTCCTCCAATTGTACACAGAGATGTCAAGTCCAATAACATTTTGTTGGATGCTGAATTCGGAGCTAAGATAGCAGATTTTGGAGTAGCTATGGCTGTCGATATATCCCAGGGTAAATCCATGTCAGTGATTGCTGGTTCTTGTGGCTATATTGCCCCAGAGTATGCTTATACATTGAAAGTGAACGAGAAGAGCGACATCTTTAGCTACGGGATGGTTATCCTTGAATTGATAACGGGGAAGCGGCCGATCGACTCCGAGTTCAAAGAAAACGATCTGGTGAAATGGGTATGCACCACTTTAGAAGAAGAAGGCGTTAACCATATTCTAGACCCCAAATTGGATTCGTGTCACCAGGAGGAAATGTTGAAGGTCCTCAACATAGGCCTCCTATGCAGCAGTCCTCTACCTATCAACCGCCCATCCATGAGACGAGTGGTTACAATGTTGTTAGAAGTTCGCACGGATAGCAATTCGAAGATTGGAAGGAGAAAGGGAAGATTGACACCATATTATTTCGAGGATGTTTCGGATAGTGGAAATGTGGTATAG 3009 44.9 MPLWPFLFLFCFPLFSFSLNQEGYVLYTFKRSVEDRNNVFSTWHEADPDPCSWDGITCDAHHHVISVDLSSSRISASFPLQLCKLPHLLYLSLYNNTFHSLLPAGISNCSSLEFLDLSQNLLTGPLPPSIADLPNIRYLDLSGNNFSGEIPPSFGRFRKLEAFSIVLNLVSGTIPPFLGNITTLRMLNMSYNSFSPGRIPPELGSLVNLEVLWLTACNLVGEIPESLVGLEQLVLLDLSINNLTGPFPRALTELTHVTQIELFGNKLTGVLPNEFSKLKSLRLFDISMNNLAGPIPGSLFELPLESLNAFENNFEGSLPESIGESRTLREIKLFANRFTGSLPTHLGKYSPLESLDISDNFFSGRLPENLCEKGALIEIMLINNLFSGELPSSLGNCQSLTRMRLGNNNFTGSVPENVWGLSDVALMELANNSFSGPISKKIANAKMLNLLLISNNNFSGTIPEEIGSLENMVEFSADHNKFIGNIPENLTKMDRLAKLDLQNNRLSGLLNYRLDAWERLNELNLANNNFSGPIPPEIASLPVLNYLDLSGNQFSGEIPNGLQNLNLNVLNLSYNQLTGTLPSYFERSMYKNSFLGNPDLCREENDACHTVQSTRNGGGGGGGGCDEGGGCIWLLRSFFVFAGLIFFVGVVLFHVKYRTFVKARSLNIKSKWTMISFQKLSFGEDEIVGSLDEHNVIGSGGSGLVYKVALANGETIAVKKLWPELPNDCPSIDLEKNWTEINAFDAEVKTLGEIRHKNIVKLLCCCTNGDCKLLVFEYMPNGSLGDMLHGSRSELLDWPTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDAEFGAKIADFGVAMAVDISQGKSMSVIAGSCGYIAPEYAYTLKVNEKSDIFSYGMVILELITGKRPIDSEFKENDLVKWVCTTLEEEGVNHILDPKLDSCHQEEMLKVLNIGLLCSSPLPINRPSMRRVVTMLLEVRTDSNSKIGRRKGRLTPYYFEDVSDSGNVV 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35041667 35044861 + CmPI595203_01g022740.1 Cmu01g2274 407780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2274 1002 SUPERFAMILY Protein kinase-like (PK-like) 687 969 IPR011009 -
Cmu01g2274 1002 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 179 271 - -
Cmu01g2274 1002 SUPERFAMILY RNI-like 198 590 - -
Cmu01g2274 1002 SUPERFAMILY L domain-like 44 269 - -
Cmu01g2274 1002 FunFam Receptor-like protein kinase HSL1 303 610 - -
Cmu01g2274 1002 Pfam Leucine rich repeat N-terminal domain 19 59 IPR013210 -
Cmu01g2274 1002 Gene3D Ribonuclease Inhibitor 169 270 IPR032675 -
Cmu01g2274 1002 Gene3D Ribonuclease Inhibitor 18 168 IPR032675 -
Cmu01g2274 1002 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524(InterPro)
Cmu01g2274 1002 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 972 IPR050647 -
Cmu01g2274 1002 SMART LRR_typ_2 206 230 IPR003591 -
Cmu01g2274 1002 SMART LRR_typ_2 254 277 IPR003591 -
Cmu01g2274 1002 SMART LRR_typ_2 133 157 IPR003591 -
Cmu01g2274 1002 SMART LRR_typ_2 85 109 IPR003591 -
Cmu01g2274 1002 SMART LRR_typ_2 493 516 IPR003591 -
Cmu01g2274 1002 SMART LRR_typ_2 541 564 IPR003591 -
Cmu01g2274 1002 SMART LRR_typ_2 278 302 IPR003591 -
Cmu01g2274 1002 Gene3D Ribonuclease Inhibitor 273 612 IPR032675 -
Cmu01g2274 1002 Gene3D Transferase(Phosphotransferase) domain 1 779 989 - -
Cmu01g2274 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2274 1002 Pfam Leucine Rich Repeat 448 469 IPR001611 GO:0005515(InterPro)
Cmu01g2274 1002 Pfam Leucine Rich Repeat 208 230 IPR001611 GO:0005515(InterPro)
Cmu01g2274 1002 Pfam Leucine Rich Repeat 352 371 IPR001611 GO:0005515(InterPro)
Cmu01g2274 1002 Pfam Leucine Rich Repeat 566 586 IPR001611 GO:0005515(InterPro)
Cmu01g2274 1002 Gene3D Phosphorylase Kinase; domain 1 670 778 - -
Cmu01g2274 1002 Pfam Leucine rich repeat 495 554 IPR001611 GO:0005515(InterPro)
Cmu01g2274 1002 Pfam Leucine rich repeat 95 146 IPR001611 GO:0005515(InterPro)
Cmu01g2274 1002 SMART serkin_6 691 991 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2274 1002 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 19 178 - -
Cmu01g2274 1002 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 779 985 - -
Cmu01g2274 1002 ProSiteProfiles Protein kinase domain profile. 691 970 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2274 1002 Pfam Protein kinase domain 693 918 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2274 Cmu-Chr1:35041667 Cmu02g0238 Cmu-Chr2:2254144 4.80E-131 dispersed
Cmu03g0919 Cmu-Chr3:3853925 Cmu01g2274 Cmu-Chr1:35041667 2.40E-16 transposed
Cmu06g0954 Cmu-Chr6:13768921 Cmu01g2274 Cmu-Chr1:35041667 2.10E-12 transposed
Cmu02g1904 Cmu-Chr2:32975324 Cmu01g2274 Cmu-Chr1:35041667 4.30E-16 transposed
Cmu01g2274 Cmu-Chr1:35041667 Cmu03g1389 Cmu-Chr3:9122072 4.80E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75259 PF00069 Pkinase 3.80E-41 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2274 - - - 0.0