Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2280 ATGGGTGCTCTCATCGATCTCAATACTACTGAAGAAGATGAATCTCCCTCTTCTGCTGGTTCCTCTGTTTCTTCTTCCTCCGCTTCTGCTTTAACCTCCTCTCCTTCACCTTCTGTTACTTCCTCAATTTGCTTGGAGCTATGGCATGCTTGTGCTGGACCTCTCACCTCTTTGCCCAAGAAAGGGAGTTTGGTTGTGTATTTGCCGCAGGGTCACTTCGAGCTGATTCAAGAATTTCCGGCTACGCCTTATGATCTCCCTCCCCACATCCTCTGTCGCGTCATTGATGTTCAGCTTCATGCTGAAGCTGGGAGTGACGAGGTTTATGCTCAGGTTTCTTTGTTTCCTGAAAACGAGAAAATGGAGCACAAGATGCAGGAAGAGATGAACAATGACAGTGAGGAGGAGGATGTTGAAGAAGGTGAGAAGACTACAACACCCCACATGTTCTGCAAGACCCTTACCGCTTCTGACACCAGTACTCATGGAGGCTTTTCCGTCCCTAGACGTGCAGCTGAGGATTGCTTCCCACCATTGGACTATAATCAACAGAGGCCTTCACAAGAGCTAGTAGCAAAGGATCTCCTTGGGCTAAAATGGAAGTTCAGGCACATATATCGTGGGCAGCCTAGAAGGCATTTGCTAACCACTGGATGGAGTGCTTTCGTGAACAAGAAAAGGCTTGTTTCTGGAGATGCAGTGCTTTTTCTTAGGGGCAACGATGGTGAATTAAGACTGGGAATTCGAAGAGCTGCACAGCTTAAAAATGGTTCTGCCTTTTCCAATATTTGCAGTCAGCAGCTCAACTCTAGTAGTGTCATGGATGTGGTTAATGCGATATCTACAAAAAGTTCCTTTAGTGTATACTACAATCCCAGGGCTACCTCTTCACAGTTTGTCTTACCCTTTCACAAGTTCTTGAAGAGCATTAACCATTCTTTCTCTGTTGGAATGAGGTTTAGGCTGAGTTTTGAAACCGAAGATGCTGCAGATCGAAGACATTCTGGACATATAACTGGAGTAGGCGATGTGGATCCTATCAGATGGCCAGGATCAAGGTGGAGGTCCCTTATGGTGAGGTGGGACGATGGCGAAACTAACAGGCATGGCAGGGTTTGCCCTTGGGAGATTGAGCCCTCTGGTTCTGTCTCTTTGTCTAGCAACTTGGTTCCACCTGGTCTGAAAAGAACCAGGATTGGGCTCTCTTCCACAAAACTAGAGTTTCCAGTTCCAAATGGGATTGGAGCATCAGACTTTGGGGAATCTTTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTACAGTACTCCCATTGACGGTGAGGAAAACAACCGTAATCCACCCGAAAAGAGGAGATTGTTTCCTGGTTTACATGGTTCTGGGATAGCTTTGATGAGAAATGGTCCAAGAATCCCACTTATTAACTCCGAAACTTCCTCCCGGGGTATCGTGTTTGATGAATCCTTTCAATACCATAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGTCCCTTTTATGGTAGGTCCATGGCCACCAATGAAGTTAAGGCAAGTGGTGGTTGTGGCCCTGTCGATGGCATTCGATTATCTAGGACTAAAGATGGATGGCCCATGACAATGCAATGTGAAAATTTCCTCACACGGTCTTCCATTCCTTCTGTACAAGTCTCATCACCATCTTCTGTATTAATGTTTCAGCAGTCGATGGTTCCTGTTCAAAGCTTTAATTCACATAACCGTGTTGCAGAACAGAGGATTATGAACAAAAGTACATCCCATAATTCTGGGACAGCATTTATCACTAACCATAGCTCGAATACTGAAGTCAACCCACAAGGCATGTGTCCCACTTCATTGGGCGAGCAGAATCACCTCGGCCTATCACATCCTTCAACAACAACAGCACCAGCAGCATTTACAGGCAGTAAAGATCTATCTTCAACTTGCAAACCTGGCTGTAGATTGTTTGGTTTTTCATTGACAGAGGAAAAGAATGTTGGGAATACAGACAAGGCTTCTCCAGCAACAACTTCCAATAATGCAGGAACAACCACTGTTTTGTCCAATGTTGGAGTACAATGTCCTTTGAAGTCTCCTCTCATGAGCAAGGTGGTTGGAAGCAACTGTACCAAAGGGGCTTTTCAGTACCACTTTGCAAATTACAGTACCTACTACTGA 2187 45.13 MGALIDLNTTEEDESPSSAGSSVSSSSASALTSSPSPSVTSSICLELWHACAGPLTSLPKKGSLVVYLPQGHFELIQEFPATPYDLPPHILCRVIDVQLHAEAGSDEVYAQVSLFPENEKMEHKMQEEMNNDSEEEDVEEGEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKNGSAFSNICSQQLNSSSVMDVVNAISTKSSFSVYYNPRATSSQFVLPFHKFLKSINHSFSVGMRFRLSFETEDAADRRHSGHITGVGDVDPIRWPGSRWRSLMVRWDDGETNRHGRVCPWEIEPSGSVSLSSNLVPPGLKRTRIGLSSTKLEFPVPNGIGASDFGESLRFQKVLQGQEILGYSTPIDGEENNRNPPEKRRLFPGLHGSGIALMRNGPRIPLINSETSSRGIVFDESFQYHKVLQGQEIFPSPFYGRSMATNEVKASGGCGPVDGIRLSRTKDGWPMTMQCENFLTRSSIPSVQVSSPSSVLMFQQSMVPVQSFNSHNRVAEQRIMNKSTSHNSGTAFITNHSSNTEVNPQGMCPTSLGEQNHLGLSHPSTTTAPAAFTGSKDLSSTCKPGCRLFGFSLTEEKNVGNTDKASPATTSNNAGTTTVLSNVGVQCPLKSPLMSKVVGSNCTKGAFQYHFANYSTYY 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35083595 35087944 - CmPI595203_01g022800.1 Cmu01g2280 407786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2280 728 MobiDBLite consensus disorder prediction 1 36 - -
Cmu01g2280 728 FunFam Auxin response factor 148 252 - -
Cmu01g2280 728 SUPERFAMILY DNA-binding pseudobarrel domain 145 260 IPR015300 -
Cmu01g2280 728 Pfam Auxin response factor 276 357 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu01g2280 728 Gene3D - 313 387 - -
Cmu01g2280 728 MobiDBLite consensus disorder prediction 10 36 - -
Cmu01g2280 728 Gene3D - 148 252 IPR015300 -
Cmu01g2280 728 CDD B3_DNA 148 250 IPR003340 GO:0003677(InterPro)
Cmu01g2280 728 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 680 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu01g2280 728 FunFam Auxin response factor 313 384 - -
Cmu01g2280 728 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677(InterPro)
Cmu01g2280 728 SMART B3_2 150 252 IPR003340 GO:0003677(InterPro)
Cmu01g2280 728 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2280 Cmu-Chr1:35083595 Cmu06g1875 Cmu-Chr6:29494682 5.60E-97 dispersed
Cmu01g2280 Cmu-Chr1:35083595 Cmu02g2094 Cmu-Chr2:34577424 2.80E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5621 PF02362 B3 1.60E-21 CL0405 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2280 K14486 - csv:101220018 1299.65