Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2282 ATGGTACTCCCGTTATTGAAGCTCGGAACCCTGGCGTTGAAAACTCTGAGCAAGCCGCTCGGTAATAGGCTCAAGAAACAAGCTGCGTTGCACCCCAGATTTAGGCAGTTCATCATTAATGTGGCCCAGATTAACCATCGGATGTCAACGCAAATGCAAAGACGCATATACAGTCATGCAACTGATGTAGAAATTCGCCCTCTGGATGAGGAGAAAGCAGTTCAGGCTGCTGTTGACCTGATTGGCGAGGTTTTTGTCTTCTCGGTAGCCGGAGCAATAGTGATATTTGAGGTTCAAAGAAGTGCTAGGTCAGAAGCCAGAAAAGAAGAACTACGCAGACAAGAAATGGAGGCACTGAGGCAAAGGGACGAAAGCTTATCGACAGAAATGGAACTTTTGAAGCTTAAACTTGTAGAATTGGAACAACAAGCCAAAGGACGAGGTGTCCTTGCACTTTCTTGCTCCATATTGTGGGAGGTCCAAGCCCTGTTCAGAACTAGGGCTTGCCATTCACCTGCTACCCATTTTCCTGCGAGTTCCTCGGGGCTAGGAGAAAAGTTTGAGTTCTGTAATGGGAAAGCATTCAAAGACCAGTTGCAATATGCAAGGAAAGAGAGCCGCACGGTTGATGTGACAGTTCTCGAGGAACAAGTCCATCAGATGCTTCGTGAGTGGAAAGCTGAGCTGAACGAGCCCTCTCCAGCATCCTCTTTGCAACAAGGTGGAAGTCTTGGGTCATTTTCATCGGACATTTGTCGATTGTTGCAACTTTGCGAGGAGGATGATGATGCGTCTAGTCCATTAGCTGCTCCTAAGCCCGAACCTAATGAACAAAATTTGCAGGTTGGAGATACTATGGCACTGCAAGAGGGATATAATGTGAATCATGGACACCAAGAACCAAGCTTCCCTCTGGTTGATCAATGCAAGAACTCCCCTTCAGGAGTGCATGGTATGGCTATGAATAACTTGGAAGGACCTACACAATTGGAGTGTCATCAGTTTGATTTACATCAAGGCATTGAGCAGAACTTCTACTCTATTCTTAATGGTAGAGGATTATGTGGGGAGGGTGCAATTCCTCATGTTTCTAGCTACTGTCCCAGCATTTGCCCTCCACCTGCTGCTTTTTTGGGTCCAAAATGTGCGCTTTGGGATTGCCCACGACCTGCCCAAGGGATGGATTGGTGTGAGGACTACTGTAGCAGCTTTCATGCTGCCTTAGCATTGAATGAAGGCCCTCCTGGAATGGGTCCAGTTTTAAGACCTGGTGGAATTGGTCTGAAGGATGGTTTGCTTTTTGCTGCTCTTAGTGCAAAGGCACAAGGGAAAGATGTTGGTATCCCTGAATGTGAGGGAGCTGCCACGGCAAAATCCCCATGGAATGCTCCTGAGCTTTTTGATCTGTCAATATTGGAGGGTGAGATGATTAGGGAGTGGCTTTTCTTTGATAAGCCTCGTAGAGCATTTGAGAGTGGGAATAGAAAGCAGAGGTCACTGCCTGATTACAGTGGACGTGGTTGGCACGAGTCAAGAAAGCAAGTGATGAATGAGTTTGGAGGGCTGAAAAGATCTTATTACATGGATCCTCAGCCATTGAACCACTTTGAGTGGCATCTTTATGAATATGAAATTAATAAGTATGATGCCTGCGCTTTGTATAGATTGGAGCTGAAACTTGTCGATGGGAAAAAAGGTTCTAAGGCAAAGGTATCTAATGATTCAGTTGCTGATTTACAGAGGCAAATGGGGAGATTGACCGCCGAATTTCCTGATAATAAACGCTTTGTTAAGGGGAGGACCAGAATTAACACAAAAGTTGGTCTTGGAAATGTTTACCCCTCAGCAAATAGAGTCATGCCGCCCAATGGAACATATGACTATATGCTTCATGCACAATATGATTACCTTGTGGAGAATTTGAGTGAATATTACCTTACATAG 1944 45.42 MVLPLLKLGTLALKTLSKPLGNRLKKQAALHPRFRQFIINVAQINHRMSTQMQRRIYSHATDVEIRPLDEEKAVQAAVDLIGEVFVFSVAGAIVIFEVQRSARSEARKEELRRQEMEALRQRDESLSTEMELLKLKLVELEQQAKGRGVLALSCSILWEVQALFRTRACHSPATHFPASSSGLGEKFEFCNGKAFKDQLQYARKESRTVDVTVLEEQVHQMLREWKAELNEPSPASSLQQGGSLGSFSSDICRLLQLCEEDDDASSPLAAPKPEPNEQNLQVGDTMALQEGYNVNHGHQEPSFPLVDQCKNSPSGVHGMAMNNLEGPTQLECHQFDLHQGIEQNFYSILNGRGLCGEGAIPHVSSYCPSICPPPAAFLGPKCALWDCPRPAQGMDWCEDYCSSFHAALALNEGPPGMGPVLRPGGIGLKDGLLFAALSAKAQGKDVGIPECEGAATAKSPWNAPELFDLSILEGEMIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKYDACALYRLELKLVDGKKGSKAKVSNDSVADLQRQMGRLTAEFPDNKRFVKGRTRINTKVGLGNVYPSANRVMPPNGTYDYMLHAQYDYLVENLSEYYLT 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35105186 35115168 + CmPI595203_01g022820.1 Cmu01g2282 407788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2282 647 Pfam Optic atrophy 3 protein (OPA3) 6 126 IPR010754 -
Cmu01g2282 647 PANTHER TRANSCRIPTION FACTOR VOZ1 198 645 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(PANTHER)|GO:0048578(InterPro)
Cmu01g2282 647 Coils Coil 101 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0230 Cmu-Chr2:2190283 Cmu01g2282 Cmu-Chr1:35105186 6.90E-52 transposed
Cmu01g2282 Cmu-Chr1:35105186 Cmu02g1026 Cmu-Chr2:16861181 4.30E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5622 PF07047 OPA3 1.90E-41 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2282 - - - 0.0