Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2294 ATGAAAGCCGACCCATTTCTCGATCAAAGAGTTCGTTCCCATGTCGCTGATATAAGCACTTCATTTGCGAAGATGGGTTCTGGTCGTTGGTTTAAGGCAGTAATTCGCTTAAAGAAAGTGAAAACCTGCAGTTCAAAACAAACTAAGGAGAAATTGGATGATTTGCAAAAAGATTCCCCAAGGTTTAAAAATGGTGGCACCAATGGGAATAGTAAGTCTCTTGGGATGCCAATTGAAGATGTAGCGGCAGTTCGGATTCAGACAGCATACCGAGCATATCGTGCCAGGAAAAATTTACGTCGCTTGAAAGGGGCCTTCAGACTGCAGAATCTGACTCAAGGCAATTCCGTTAGAAAGCATGCTACATCTTCATTAGGCTATCTTCATTCATGGAGCAATATACAGGCTCAAATTAGGGCTCGTCGACTTTGTATGGTGACAGAAGGACGACTAAGACAAAAAAGATTAGAAAATCAACGAAAACTTGAGGCTAAGCTTCATCATATAGAGGTGGAGTGGTGTGGGGGTGCAGACTCCATGGATGGGATTCTTTCGAGGATACATGAGAGAGAAGAAGCGGCGGTTAAGCGCGAGCGGGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCCAATGAGATGTATGGGTTGGGTAAAGATGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATAGCTGCTCGTCCGTGGGAAAGCCGTGTACCATCTCAGTTCGATAGTCCAAAGAAATCTACAATTAGGCAATCAAGCAAAGTCAGTAAGAGAAACTCTCCATCCCCTAAAGCACGAGTTTCAATTAAACCTCCTTCCCCAAATGTGAAATCAACTTCAAAGGCTCGAAGGTTGTCTTATCCAGCAACCGAGAAAACCGAAAAACTGGCTACAGAAGAAAAAGGCGTCAAAGAAAGCGTTAAAAATGAAGGGAACACTAAGAAAGAAGAAACAGCATCCTAA 993 43.61 MKADPFLDQRVRSHVADISTSFAKMGSGRWFKAVIRLKKVKTCSSKQTKEKLDDLQKDSPRFKNGGTNGNSKSLGMPIEDVAAVRIQTAYRAYRARKNLRRLKGAFRLQNLTQGNSVRKHATSSLGYLHSWSNIQAQIRARRLCMVTEGRLRQKRLENQRKLEAKLHHIEVEWCGGADSMDGILSRIHEREEAAVKRERAMAYAFSHQWRANSNEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSQFDSPKKSTIRQSSKVSKRNSPSPKARVSIKPPSPNVKSTSKARRLSYPATEKTEKLATEEKGVKESVKNEGNTKKEETAS 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35199519 35205117 + CmPI595203_01g022940.1 Cmu01g2294 407800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2294 330 MobiDBLite consensus disorder prediction 46 73 - -
Cmu01g2294 330 MobiDBLite consensus disorder prediction 246 330 - -
Cmu01g2294 330 MobiDBLite consensus disorder prediction 282 296 - -
Cmu01g2294 330 PANTHER IQ-DOMAIN 5-RELATED 73 291 - -
Cmu01g2294 330 MobiDBLite consensus disorder prediction 297 330 - -
Cmu01g2294 330 MobiDBLite consensus disorder prediction 250 273 - -
Cmu01g2294 330 ProSiteProfiles IQ motif profile. 79 107 - -
Cmu01g2294 330 MobiDBLite consensus disorder prediction 46 60 - -
Cmu01g2294 330 Gene3D - 29 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2294 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2294 Cmu-Chr1:35199519 Cmu07g0985 Cmu-Chr7:24572503 1.80E-55 dispersed
Cmu01g2294 Cmu-Chr1:35199519 Cmu09g1952 Cmu-Chr9:35600847 9.90E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g183 . . Bda02g00019 . . Bpe01g00879 . . . . . Cma07g00203 . Car07g00168 . . . Bhi03g00330 . . . . . . Cla01g02298 Cam01g2409 Cec04g2056 . Clacu01g2430 Cmu01g2294 Cre04g1962 Cone1ag0191 Cone5ag1677 . . Lsi01g00265 Csa06g03677 . Cme08g00247 . . . . . . . Bma11g01010 . . Cmo07g00202 . . . . Cpe19g01052 . . . . . . . . . . . . . . . . . Chy02g00253 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu09g1952 . 129 607 IQD Protein Family AT3G52290 54.2 2.4e-103 372.9
Cmu05g2144 . 1766 1975 IQD Protein Family AT2G26410 51.2 2.0e-43 174.1
Cmu03g1772 . 36 443 IQD Protein Family AT3G22190 57.8 9.5e-97 350.9
Cmu05g1839 . 1 438 IQD Protein Family AT2G26180 61.6 3.9e-119 425.2
Cmu01g2294 . 25 298 IQD Protein Family AT2G33990 52.1 7.3e-63 237.7
Cmu07g0985 . 109 292 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Cmu01g2294 . 25 246 IQD Protein Family AT3G15050 50.9 1.5e-55 213.4
Cmu07g0985 . 112 285 IQD Protein Family AT3G15050 62.1 3.6e-54 208.8
Cmu01g0729 . 119 471 IQD Protein Family AT5G13460 50.4 8.2e-75 278.1
Cmu06g0268 . 1 509 IQD Protein Family AT4G00820 51.4 7.5e-115 411.4
Cmu06g0268 . 1 509 IQD Protein Family AT1G01110 50.1 2.5e-110 396.4
Cmu09g0023 . 1 399 IQD Protein Family AT3G16490 50.5 1.2e-66 250.8
Cmu03g2201 . 1 391 IQD Protein Family AT3G16490 50.2 5.2e-65 245.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007113 1 8 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 2 1 2 37