Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2315 ATGGCTGAGGTTCATAGTAGCAACACGGATGGAATTAAGCTTTTTGGCACTATGATTCATTTACAGACAAGAAAAATGAAGGAGGAACCGGAGAAAGGCGGCGGCGAAGGTGATGAAACAGAGATGAAGAGGCCAGAAAAAATTATTCCATGCCCAAGATGTAAGAGTATGGACACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCTAGACATTTCTGCAAGGGTTGCCAAAGGTACTGGACGGCCGGTGGGGCTCTCCGGAACGTACCCATCGGAGCTGGCCGCCGGAGAACCAAGCCGCCGCCTAATTGCCGGACCCTTTCCGGCGAGCTGCCAGAGGATTATGGGCAGCTTTACGATGCGGCTTCTGGGATTATTCATCAGCTTGAATTAGATGCGGTGGAAGGGTGGCGTCTCACGTTGGCGGAACAGGATTTTAGCTCGGTTTTTCCTTTCAAACGCCGGAAGATTATCGGTCAACACGGTCAAACGTCTTAA 507 49.11 MAEVHSSNTDGIKLFGTMIHLQTRKMKEEPEKGGGEGDETEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRTKPPPNCRTLSGELPEDYGQLYDAASGIIHQLELDAVEGWRLTLAEQDFSSVFPFKRRKIIGQHGQTS 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35341970 35342476 - CmPI595203_01g023150.1 Cmu01g2315 407821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2315 168 MobiDBLite consensus disorder prediction 21 44 - -
Cmu01g2315 168 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu01g2315 168 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu01g2315 168 PANTHER CYCLIC DOF FACTOR 2 27 110 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g2315 168 MobiDBLite consensus disorder prediction 22 44 - -
Cmu01g2315 168 Pfam Dof domain, zinc finger 47 102 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2315 Cmu-Chr1:35341970 Cmu10g2341 Cmu-Chr10:29720011 4.70E-31 dispersed
Cmu01g2315 Cmu-Chr1:35341970 Cmu03g1367 Cmu-Chr3:8895953 2.70E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5626 PF02701 zf-Dof 1.60E-31 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2315 - - - 0.0