Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2323 ATGGCCGACCGGCCGGACCCTGACAAGAAGACCGAAACCACCAGGAAGGACATGCCCGCGCTTCTTTTGGGCCGATACGAGATCGGGAAGCTCCTTGGCCATGGGACCTTCGCTAAGGTCTACCATGCCCGAAACATCAAGACCAACGAAAGCGTCGCCATTAAAGTCATCGACAAGGAGAAGATCCTCAAGGGTGGTTTAATCGCCCACATCAAACGCGAGATCTCAATCCTCCGCCGTGTTCGACACCCCAATATTGTGCAACTCTTCGAGGTCATGGCCACCAAGGCCAAGATCTACTTCGTTATGGAATATGTCCGCGGCGGCGAGCTTTTCAAGAAGGTTTCCAAGGGCCGATTGAAGGAAGAGGTTGCACGAAAGTACTTTCAGCAATTAATCTCTGCCGTTGCTTTTTGCCACGCGCGTGGTGTTTATCATCGGGACCTTAAACCGGAGAATTTGCTGCTCGATGAGAATGGGAATCTTAAGGTCTCCGATTTTGGCCTCAGCGCCGTCTCCGATCAAATTCGACAAGATGGGTTGTTTCATACTTTTTGTGGTACGCCGGCGTATGTGGCTCCGGAGGTTTTGGCCCGGAAAGGGTATGAGGCTGCGAAGGTCGATATTTGGTCATGTGGGGTTATTCTGTTTGTTCTGATGGCGGGTTATTTACCCTTCCACGACCAAAACATTATGGCAATGTATAAGAAGATTTACAAGGGGGAGTTTCGGTGTCCGAGATGGTTCTCGCCGGAGCTAATTCGACTCCTAACTCGTCTTCTAGATACAAATCCCGAAACCCGTTTCACAATTCCTGAAATCATGGAGAACAAATGGTTCAAAAAGGGGTATAAACATATCAAATTCTACATCGAAGACGATAAGGTCTGCAGCGTTGAGGACGGTAGTGATGATGTCGATTCCTTGTCGGATCAATCACAATCGGAATCGGATTCTGAAATTATTGAGACCAGAAGAAAGGTTACCTCACTCCCAAGACCCGCGAGTTTGAATGCATTTGATATAATTTCGTTTTCACCCGGATTTGATCTTTCTGGGTTGTTTGAGGATGGAGGGGAAGAGGCAAGATTTGTGTCCAGTGCTCCGGTGTCGAAGATTATATCGAAATTAGAGGAGATTGCAAAATTGGTGAGTTTTACTGTGAGGAAGAAGGATTGCAGGGTTAGTTTAGAGGGGTCACGGGAAGGAGTAAAAGGGCCATTGACAATCGCGGCCGAGGTATTCGAGTTGACCCCGAAATTGGTGATGGTGGAGGTGAAGAGGAAAGGGGGAGATAAAGCAGAGTATGAACAATTCTGTAATAATGAACTGAAGCCAGCATTGTTGAATCTGAAGATGGAAGAGTCTGCTGCTCCATCACATATACCATCAGATACTGAATGA 1404 47.51 MADRPDPDKKTETTRKDMPALLLGRYEIGKLLGHGTFAKVYHARNIKTNESVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVAFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAAKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYKGEFRCPRWFSPELIRLLTRLLDTNPETRFTIPEIMENKWFKKGYKHIKFYIEDDKVCSVEDGSDDVDSLSDQSQSESDSEIIETRRKVTSLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSSAPVSKIISKLEEIAKLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEVFELTPKLVMVEVKRKGGDKAEYEQFCNNELKPALLNLKMEESAAPSHIPSDTE 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35405756 35407159 - CmPI595203_01g023230.1 Cmu01g2323 407829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2323 467 Pfam NAF domain 334 390 IPR004041 GO:0007165(InterPro)
Cmu01g2323 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2323 467 FunFam Non-specific serine/threonine protein kinase 16 326 - -
Cmu01g2323 467 SUPERFAMILY Protein kinase-like (PK-like) 22 327 IPR011009 -
Cmu01g2323 467 CDD STKc_SnRK3 25 279 - -
Cmu01g2323 467 ProSiteProfiles Protein kinase domain profile. 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2323 467 ProSiteProfiles NAF domain profile. 332 356 IPR018451 GO:0007165(InterPro)
Cmu01g2323 467 Gene3D Transferase(Phosphotransferase) domain 1 17 333 - -
Cmu01g2323 467 Gene3D Kinase associated domain 1, KA1 334 452 - -
Cmu01g2323 467 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524(InterPro)
Cmu01g2323 467 SMART serkin_6 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2323 467 CDD CIPK_C 338 448 - -
Cmu01g2323 467 FunFam Non-specific serine/threonine protein kinase 18 105 - -
Cmu01g2323 467 MobiDBLite consensus disorder prediction 302 322 - -
Cmu01g2323 467 FunFam Non-specific serine/threonine protein kinase 334 452 - -
Cmu01g2323 467 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2323 467 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 446 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2323 Cmu-Chr1:35405756 Cmu02g1698 Cmu-Chr2:30841599 3.20E-146 dispersed
Cmu01g2323 Cmu-Chr1:35405756 Cmu01g2324 Cmu-Chr1:35422339 4.50E-19 tandem
Cmu01g2323 Cmu-Chr1:35405756 Cmu03g1354 Cmu-Chr3:8670574 2.80E-142 wgd
Cmu01g2323 Cmu-Chr1:35405756 Cmu07g1025 Cmu-Chr7:25002257 3.40E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75261 PF00069 Pkinase 2.70E-76 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2323 - - - 0.0