Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2325 ATGTCAGAAATCCAACGGCTCATCATTGCCACGCTCATCTGCGGTCACAGCCAAGATGGAGAAATTATGGTCTTCACCACACAATGGATTTCCTCAGTCACAATCTCAGCCATTAAAAACACACACATCTCGAGATTTCCTGCTCTCGCTTTCGTTTTCCCTCCCCCTGCTTGTTTGGTCATGGAAGTTGTTAGAGTGGTTCCGTCGCTGTTCTTCCTCATCTGGGTGGTCTCTGCCTCAGACAGTCATTTGTCTCCCAAAGGAGTAAACTATGAAGTGGCGGCTTTGATATCAGTGAAGAGTAGGATAAGGGACGAGCGGGGAGTGATGCAAGGATGGGACATAAATTCGGTTGATCCATGCACCTGGAATATGGTTGCTTGCTCTGCTGAGAGCTTTGTGATTTCTCTTGAGATGCCAAATATGGGCTTATCTGGAACGCTTTCCCCTAGCATTGGGAACCTGAGTCATCTTCGGACAATGTTGTTGCAAAATAATGAGTTATCTGGTCCAATCCCAGATGATATAGGAGAACTTTCAGAGCTTCAGACTCTTGACCTTTCTAACAACCAGTTTGTAGGCGGGATTCCAAGTTCTTTGGGGTTTCTCACTCATTTAAATTACTTGAAGCTCAGTAGTAACAAGTTAAGTGGACCAATACCGGAATCTGTTGCAAATATCTCAGGCCTCTCCTTTCTAGATTTATCGAATAATAATCTCAGTGGTCCAACTCCAAGAATACTTGCCAAAGAGTACAGTGTTGCAGGGAATAGCTTCCTTTGTGCATCTTCATCATCTAAATTTTGTGGTGTACTTCCAAAGCCAGTTAACGAAACTGGTTCGTCCCAGAAATATAATGGCCGTCATCACATGGTTCTTTCCATAGCACTAATTGTCAGTTTCACATTTGTGCTTTCTGTTGTGTTACTTGTTGGCTGGGTGCATTGTTATAGATCTCATCTTGTCTTCACATCCTACGTGCAACAAGATTATGAATTTGATATAGGTCATCTGAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACATGTAATTTTAGTCCCCAAAACATCCTGGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGTTATCTTCCAAATGGGACATATGTTGCTGTCAAGAGACTGAAAGATCCGAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATTGGCTTAGCAGTGCACCGCAATCTCTTGCGTCTGTATGGCTTTTGTATGACGCCAGATGAGAGATTGCTTGTTTATCCATATATGCCAAATGGGAGTGTTGCTGACCGTCTTAGAGATGCAGGCCAAGAGAAGCCTTCATTGAATTGGAACAGAAGATTGCGTATTGCCCTTGGTGCAGCTCGTGGACTCCTATACTTGCATGAGCAGTGTAACCCAAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCCGTGGTTGGGGATTTCGGTCTGGCAAAGATGTTAGATAGGAGAGATTCACATGTTACTACTGCAGTTAGGGGCACAGTGGGACATATTGCCCCGGAATATCTTTCAACTGGACAATCTTCAGAAAAGACTGATGTTTTTGGATTTGGCATATTGGTTCTGGAACTCTTGACAGGGCAAAAAGCACTTGATGCTGGAAATGGTCAAATTCGAAAGGGAATGATCCTCGAATGGGTTAGAACATTACATGAGGAAAAGAGGTTAGATGTGCTGGTGGACAGGGATCTTAAAGGATGTTTTGATGCAATGGAGCTGGAAAAAGCTGTAGAGTTGGCTCTGCAGTGTACTCAATCGCATCCACAACTTAGACCAAAGATGTCCGAGATCCTGAAGATTCTAGAAGGTCTCGTTGGACAGTCGAGTCAAATGGAGGAATCACCAGGTGGAGCAAGTCTTTATGAGGATAGAACTCACAGTTTCTCCAGAAATTACAGTGATATTCATGAAGAATCTTCATTTGTTGTTGAAGCCATGGAGCTTTCCGGACCTCGATGA 2031 43.13 MSEIQRLIIATLICGHSQDGEIMVFTTQWISSVTISAIKNTHISRFPALAFVFPPPACLVMEVVRVVPSLFFLIWVVSASDSHLSPKGVNYEVAALISVKSRIRDERGVMQGWDINSVDPCTWNMVACSAESFVISLEMPNMGLSGTLSPSIGNLSHLRTMLLQNNELSGPIPDDIGELSELQTLDLSNNQFVGGIPSSLGFLTHLNYLKLSSNKLSGPIPESVANISGLSFLDLSNNNLSGPTPRILAKEYSVAGNSFLCASSSSKFCGVLPKPVNETGSSQKYNGRHHMVLSIALIVSFTFVLSVVLLVGWVHCYRSHLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPSLNWNRRLRIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQIRKGMILEWVRTLHEEKRLDVLVDRDLKGCFDAMELEKAVELALQCTQSHPQLRPKMSEILKILEGLVGQSSQMEESPGGASLYEDRTHSFSRNYSDIHEESSFVVEAMELSGPR 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35427622 35431725 + CmPI595203_01g023250.1 Cmu01g2325 407831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2325 676 ProSiteProfiles Protein kinase domain profile. 353 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2325 676 Gene3D Phosphorylase Kinase; domain 1 323 428 - -
Cmu01g2325 676 Gene3D Ribonuclease Inhibitor 89 271 IPR032675 -
Cmu01g2325 676 SUPERFAMILY Protein kinase-like (PK-like) 335 626 IPR011009 -
Cmu01g2325 676 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524(InterPro)
Cmu01g2325 676 Pfam Leucine Rich Repeat 157 179 IPR001611 GO:0005515(InterPro)
Cmu01g2325 676 Pfam Leucine Rich Repeat 230 249 IPR001611 GO:0005515(InterPro)
Cmu01g2325 676 Pfam Leucine Rich Repeat 182 203 IPR001611 GO:0005515(InterPro)
Cmu01g2325 676 Pfam Leucine Rich Repeat 205 226 IPR001611 GO:0005515(InterPro)
Cmu01g2325 676 Pfam Leucine rich repeat N-terminal domain 90 129 IPR013210 -
Cmu01g2325 676 Pfam Protein kinase domain 356 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2325 676 FunFam Somatic embryogenesis receptor-like kinase 1 429 640 - -
Cmu01g2325 676 SMART serkin_6 353 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2325 676 SUPERFAMILY L domain-like 91 251 - -
Cmu01g2325 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2325 676 FunFam Somatic embryogenesis receptor kinase 1 322 428 - -
Cmu01g2325 676 FunFam Putative LRR receptor-like serine/threonine-protein kinase 89 271 - -
Cmu01g2325 676 Gene3D Transferase(Phosphotransferase) domain 1 429 637 - -
Cmu01g2325 676 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 69 676 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2325 Cmu-Chr1:35427622 Cmu05g2383 Cmu-Chr5:33065048 5.70E-152 dispersed
Cmu05g1954 Cmu-Chr5:29368443 Cmu01g2325 Cmu-Chr1:35427622 1.60E-37 dispersed
Cmu06g1645 Cmu-Chr6:27570430 Cmu01g2325 Cmu-Chr1:35427622 6.30E-60 dispersed
Cmu01g0713 Cmu-Chr1:7970515 Cmu01g2325 Cmu-Chr1:35427622 9.50E-146 transposed
Cmu06g1329 Cmu-Chr6:24445132 Cmu01g2325 Cmu-Chr1:35427622 2.10E-127 transposed
Cmu08g1721 Cmu-Chr8:28621077 Cmu01g2325 Cmu-Chr1:35427622 2.20E-158 transposed
Cmu11g0516 Cmu-Chr11:5615607 Cmu01g2325 Cmu-Chr1:35427622 4.90E-153 transposed
Cmu01g2325 Cmu-Chr1:35427622 Cmu07g1022 Cmu-Chr7:24961755 1.80E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75263 PF00069 Pkinase 1.60E-44 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2325 - - - 0.0