Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2336 ATGGGCCGTGAGAAGAAGCGACTTCCACGAGTAATGACTGTTGCGGGGGTAATATCAGAGCTTGATGATGATCAGGCAAATAGTGTGACTTCTGAGGGACCTTCGTCAGTGGTGCAAGACCGAATAATTATTGTTGCTAATCAGCTTCCTATTAAAGCTAAGCGTAGACCCGACAATAAAGGCTGGAGTTTTAGTTGGGATGAAGACTCTTTGCTGTGGCAGCTCAAGGATGGTTTACCTGAAGATATGGAGGTTTTGTATGTAGGATCTTTGCGGGTGGATGTTGATTCTTCCGAACAAGATGATGTATCACAGCTTTTGTTGGAGAGGTTTAAGTGCGTTCCTGCCTTTTTGCCTCATGACATTTTATCAAAATTTTATCATGGTTTTTGTAAGCAGCAATTGTGGCCACTCTTCCATTATATGCTTCCGTTCTCAGCGACTCATGGTGGTCGGTTTGATCGCTCTCTGTGGGAGGCATATGTAGCAGCAAATAAAATTTTTTCTCAAAGGGTGATTGAGGTCATTAACCCAGATGATGATTTTGTATGGATTCATGATTACCATTTAATGGTGCTGCCCTCCTTCTTGAGGAGAAGGTTTACAAGATTGAGAATGGGCTTTTTTCTTCACAGTCCATTTCCTTCGTCAGAAATATATAGGACATTGCCAGTGAGGGAAGAGATTCTTAAGGCCCTTTTGAATGCAGACCTTATTGGCTTTCACACTTTCGACTATGCTCGACACTTCCTGTCTTGTTGTAGTCGGATGTTGGGTTTGGAATATCAGTCAAAGAGGGGTTATATTGGGTTGGAATATTTTGGAAGGACCGTGGGGATAAAGATCATGCCTGTTGGAATTCACATGGGCCAGATGGAGTCAGTGTTAAGACTTGCTGATAAAGACTGGAGGGTACAGGAGCTCAAAAGACAGTTTGAAGGAAAAGTTGTGTTACTTGGAGTTGATGACATGGACATTTTTAAAGGGGTCAATCTGAAGCTGTTGGCAATGGAACAAATGCTGAAGCAACATCCAAAGTGGCAGGGAAGAGCCGTTTTCATACAGATTGCAAACCCAGCTAGAGGGAGAGGGAAAGATCTCGAGGAAATACAAGATGAAATACAGGAATGCTGCAAGAGAATTAATGAAACTTTTGGGCAGCCAAATTACGAGCCGATTGTGTTCATTGATCGGCCTGTTTCTCTCACTGAAAGAGCAGCGTATTATACGGTTGCTGAATGTGTTGTAGTCACAGCGGTGAGGGATGGTATGAACCTAACTCCTTATGAGTACGTTGTCTGCAGGCAGGGAACCTCTGGATCAGATTATAGCACAGAAACAAATGGACCACATAAAAGCATGCTAGTCATATCAGAGTTCATGGGATGTTCCCCTTCTCTTAGTGGTGCAATTCGGGTTAACCCATGGAACATTGAAGCTACTGCTGAAGCATTGAATGAGGCAATATCAATGGCTGATGCTGAAAAGCAATTACGGCATGAAAAGCACTATAAATATGTGAGTACACATGATGTGGCATACTGGTCAAGGAGTTTTTTCCAAGATATGGAAAGAACTTGTAAGGATCACTTCAGAAGACGGTGCTGGGGAATTGGGTTGGGCTTTGGTTTCAGAGTTGTAGCCCTTGATCCTAACTTTAGAAAGTTGTCTATTGATGCCATTGTAGCTGCATATTCAAGGTCTAAAAGGAGGGCTATACTTTTGGATTATGATGGCACTGTCATGCCACAAACTTCAATTGATAAGACCCCAAGTCGTCAAGTTATTTCAATCATAGATTCACTTTGTGATGATGTTAGGAATACTGTTTTTGTTGTCAGTGGAAGAGGACGTGAAAGTTTGGGCAATTGGTTTTCTTCTTGCGATAAACTTGGGATTGCTGCAGAGCATGGCTATTTTATGAGGTGGTCTGCTGATAAGGACTGGGAAAATTGTGGTCAAGGTAGTGATTTTGGCTGGATACAGATTGCAGAGCCAGTCATGAAATTATATACAGAAGCTACTGACGGGTCTTCCATTGAAACCAAGGAAAGTGCCTTGGTGTGGCACCACCAGGATGCGGACCCTGATTTTGGTTGCAGCCAGGCCAAGGAACTGTTGGATCACCTTGAAAGTGTGCTGGCAAATGAACCAGTTGCTGTGAAAAGTGGTCAGTTTATTGTAGAAGTGAAGCCACAGGGAGTCAGTAAAGGTTTGGTGGCAGAAAAGATCTTCACGTCAATGGCAGATGCAGGAAGACGGGCTGATTTTGTGCTATGCATTGGTGATGATAGATCTGATGAAGACATGTTTGAGATCATTGGTAATGCAGTGTCAAGTGGCGCCCTCTCGTCCAATACATTAGTTTTTGCCTGCACAGTTGGACAGAAACCAAGCAAGGCCAAGTATTACTTAGATGACACAACTGAGGTCATAAATATGCTTGAAGCCCTTGCAGAAGTTTCAGACATTTCTTCTCCTCCAGAATCCCCTTGA 2496 43.11 MGREKKRLPRVMTVAGVISELDDDQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDNKGWSFSWDEDSLLWQLKDGLPEDMEVLYVGSLRVDVDSSEQDDVSQLLLERFKCVPAFLPHDILSKFYHGFCKQQLWPLFHYMLPFSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQMESVLRLADKDWRVQELKRQFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLKQHPKWQGRAVFIQIANPARGRGKDLEEIQDEIQECCKRINETFGQPNYEPIVFIDRPVSLTERAAYYTVAECVVVTAVRDGMNLTPYEYVVCRQGTSGSDYSTETNGPHKSMLVISEFMGCSPSLSGAIRVNPWNIEATAEALNEAISMADAEKQLRHEKHYKYVSTHDVAYWSRSFFQDMERTCKDHFRRRCWGIGLGFGFRVVALDPNFRKLSIDAIVAAYSRSKRRAILLDYDGTVMPQTSIDKTPSRQVISIIDSLCDDVRNTVFVVSGRGRESLGNWFSSCDKLGIAAEHGYFMRWSADKDWENCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESALVWHHQDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFTSMADAGRRADFVLCIGDDRSDEDMFEIIGNAVSSGALSSNTLVFACTVGQKPSKAKYYLDDTTEVINMLEALAEVSDISSPPESP 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35504962 35509232 + CmPI595203_01g023360.1 Cmu01g2336 407842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2336 831 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 40 528 - -
Cmu01g2336 831 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 34 293 - -
Cmu01g2336 831 Pfam Glycosyltransferase family 20 41 524 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cmu01g2336 831 FunFam Alpha,alpha-trehalose-phosphate synthase 295 508 - -
Cmu01g2336 831 Gene3D Glycogen Phosphorylase B; 31 301 - -
Cmu01g2336 831 FunFam Trehalose-6-phosphate synthase 2 654 733 - -
Cmu01g2336 831 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 700 830 - -
Cmu01g2336 831 NCBIfam trehalose-phosphatase 568 819 IPR003337 GO:0005992(InterPro)
Cmu01g2336 831 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 570 687 - -
Cmu01g2336 831 NCBIfam HAD-IIB family hydrolase 573 779 IPR006379 -
Cmu01g2336 831 Pfam Trehalose-phosphatase 574 808 IPR003337 GO:0005992(InterPro)
Cmu01g2336 831 CDD HAD_TPP 572 813 - -
Cmu01g2336 831 Gene3D - 570 676 IPR023214 -
Cmu01g2336 831 Gene3D - 700 826 IPR023214 -
Cmu01g2336 831 Gene3D Glycogen Phosphorylase B; 302 509 - -
Cmu01g2336 831 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 6 821 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
Cmu01g2336 831 SUPERFAMILY HAD-like 571 819 IPR036412 -
Cmu01g2336 831 CDD GT20_TPS 41 524 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2336 Cmu-Chr1:35504962 Cmu05g2572 Cmu-Chr5:34441531 0.00E+00 dispersed
Cmu10g0990 Cmu-Chr10:1896051 Cmu01g2336 Cmu-Chr1:35504962 0.00E+00 transposed
Cmu01g2336 Cmu-Chr1:35504962 Cmu07g0305 Cmu-Chr7:3018889 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2336 K16055 - csv:101213082 1650.57