Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2353 ATGTCCAAGCCTTATCAGTCACCACTCACAAGAATGATTAGGGGAAAAGGAAAGGGAGATTTCATAAAGACAGCAAACAGCCCTTCTTTTTGTTCTGTTTTAAAAGTTCCTTCTTCAACCAGCTCTTTTCCTCATCAGCCAAAAGAAAATCTTAGATTCTCACCTTCTGATTGTGCTGCTCATTTCACCTGTAAGTTGCAAATAAAGGGGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGGTTGCTCAAAAAAGCGTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACAATTGATAGGTACAAGAAGGCATCCTCAGATTCCACCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTACAGAACTCAAACAGGAACATGTTGGGCGAGTCTTTAAGTTCTTTGAGTGTAAAAGATCTGAGAAGCCTGGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGAATGAACTCCTCTTTGCTGAAATTGAGTATATGCGAAAAAGGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCATACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAATATCCACGCCAAGACAACATGGCTCTTCACACTCTGATTGGTGGATTGGATTATATTATAAGGAGTGCTGGCCATATGCCGATTGAAAGTCTCAACTTTCTCTGA 987 40.73 MSKPYQSPLTRMIRGKGKGDFIKTANSPSFCSVLKVPSSTSSFPHQPKENLRFSPSDCAAHFTCKLQIKGFQNQEEKMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSTNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLRSLESKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALHTLIGGLDYIIRSAGHMPIESLNFL 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35604554 35611168 + CmPI595203_01g023530.1 Cmu01g2353 407859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2353 328 Gene3D - 98 179 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g2353 328 ProSiteProfiles K-box domain profile. 172 262 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu01g2353 328 FunFam agamous-like MADS-box protein AGL11 98 181 - -
Cmu01g2353 328 PRINTS MADS domain signature 88 108 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g2353 328 PRINTS MADS domain signature 108 123 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g2353 328 PRINTS MADS domain signature 123 144 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g2353 328 CDD MADS_MEF2_like 87 161 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cmu01g2353 328 PANTHER SERUM RESPONSE FACTOR HOMOLOG 86 281 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu01g2353 328 ProSiteProfiles MADS-box domain profile. 86 146 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g2353 328 Pfam K-box region 168 256 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu01g2353 328 Coils Coil 209 229 - -
Cmu01g2353 328 SMART madsneu2 86 145 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g2353 328 SUPERFAMILY SRF-like 87 163 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g2353 328 ProSitePatterns MADS-box domain signature. 88 142 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g2353 328 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 95 142 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1768 Cmu-Chr1:31401104 Cmu01g2353 Cmu-Chr1:35604554 1.50E-35 dispersed
Cmu01g2353 Cmu-Chr1:35604554 Cmu08g0056 Cmu-Chr8:1266397 6.50E-69 dispersed
Cmu04g0424 Cmu-Chr4:13984727 Cmu01g2353 Cmu-Chr1:35604554 5.00E-32 transposed
Cmu10g1986 Cmu-Chr10:25546374 Cmu01g2353 Cmu-Chr1:35604554 1.20E-25 transposed
Cmu01g2353 Cmu-Chr1:35604554 Cmu02g1825 Cmu-Chr2:32161779 2.50E-73 wgd
Cmu01g2353 Cmu-Chr1:35604554 Cmu03g1323 Cmu-Chr3:8362806 1.10E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5631 PF01486 K-box 5.00E-28 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2353 K09264 - csv:101221430 450.669