Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2375 ATGTTCACGCTGCAGTTTGTGCCAAATGAAGCGACACTGGATGGTTTATATATCTCAATAATGGGTAAAGTTGACCTCTCGATCTCCTCTGGTACCTATTGGTACGTCAGGATCCAATTGGTCATGAACAATCGAATGGATGATCCTGAACTAGAAGCAATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGGAAGCCAAAGTAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAGGAGTGAAGCAGAGGAACGCAGACAAATGATGCTTAGTCAGATTCTGTCGATGCAAGCGAGAGAAAGACTTTCTCGAATTGCATTGGTTAAACCTGAGAAGGCAAGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTTGAAAAGGTCTCTGAAGAGAGGCTTATAACATTGCTAGAACAGATCAACAATCAGACCACAAAACAGACGAAAGTCACTGTGAGTATTCATTGCTTACTTCATCGGTACCTGCTGAAATATGAGATTGATCTGTCGCTGTCTGATGCAATCCACGCAAATTTGGAACCATTGATTACAGCTCTTGATGATGGGTTGCATTGGGTTGCTGTTTACAAGTTAAAAGATGGAATTTCTGGGTCCCAACAAAAAGCTTCTCTCTTCCTGATTAACTCCCATTTGAGCTCTCACTTTCTCCATTTGACTTCGAATTCATCCCTAAATATCATTGCCCTGCCTCCGTTTCATTCTGACGCCTTCTGTTTCTGCAAAACTATTGGACTCAAGGCTGCTGGTTGCATCTTGTCCTCAGAGGTCAACCATCGCTATATCTCAATGGAGAAAGAGCCTCTTCTTCCATATCTTAGCCCAAGAGGGAAACCGCCTCCTCCACTTCCTCAATTATGTCCACTCCCTGAAAACGATGAAATTACTCTGCCTATGACCCCCACGGAGCTCAAAGACCGCTTGATCTTTGGTCCTTCGTCGTCCCCACAAGACGCTTCTCCTATATTCGATGCTTTAACGCTAACTCTTTCCTCTTCCAGACCCTCTGCTTCATCTTCTCTTCAGGACCCGTCTACGCCTTTGGACCCAAAATCACAATCGCAGTCTCAACAAGCGTGGCTCGTGGATTCCAATTACACATGGCCCAAGAGCAACCTCCACCGCTCCAAAACCGCGCCTGCCATGGCGGTCATCAACGATGTCAATCATTCGCAGGAGCCCAAGCCACAATTTGGTAAACAATCTATCATCCGCCAAGCTGTTGTTCTTCTAATTATATACTTATCATTGGGCGTGGTTATCTATTGGATTAATCGTGATAAGTTTACGGCTCACGAGACTCATCCTGTGGTCGATGCATTGTACTTTTGCATTGTAACGATGTGTACTATTGGGTATGGAGATATTACCCCCAATAGTGCGGCGACGAAGCTGTTCTCAGTGTTGTTTGTGTTGGTGGGATTTGGGTTTATTGATATATTGCTCTCTGGAATGGTCAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTAAGGAATGTAAAGAGGGGGGTGCAGCGTCAATCTGGGAAATCTTATATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAAGTGGCATTGGCCCTTGGTGTTGTGATACTTTGTATAGGAGTTGGCATGGGTGTTATGCATTTTGTTGAGAATCTGGGGTGGTTGGATTCATTTTATCTTTCAGTTATGTCTGTCACGACAGTTGGATATGGTGATCAGGCATTCAAGTCAATGACTGGTCGTATTTTTGCTTCTATCTGGTTGCTTGTATCAACCCTTGCTGTAGCTCGGGCGTTTCTTTATTTAGCAGAGGCAAGAGTAGATAAGCGGCACAGGATGATGGCAAAATGGATACTTGGTCAGGATATGACTGTTTCTGAGTTTCTTGCTGCTGATATTGACAACAATGGTTTTGTGAGTAGGTCAGAATATGTGATATACAAGCTGAAGGAGATGGGTAAGGTATCAGAGAAAGATGTCATGCAGATATCTAATAACTTTGATAGGCTAGACACTGGCAAATGTGGGAAGATTACACTGGCTGATCTCTTGGAAAGTCATCACTGA 2115 44.02 MFTLQFVPNEATLDGLYISIMGKVDLSISSGTYWYVRIQLVMNNRMDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTVSIHCLLHRYLLKYEIDLSLSDAIHANLEPLITALDDGLHWVAVYKLKDGISGSQQKASLFLINSHLSSHFLHLTSNSSLNIIALPPFHSDAFCFCKTIGLKAAGCILSSEVNHRYISMEKEPLLPYLSPRGKPPPPLPQLCPLPENDEITLPMTPTELKDRLIFGPSSSPQDASPIFDALTLTLSSSRPSASSSLQDPSTPLDPKSQSQSQQAWLVDSNYTWPKSNLHRSKTAPAMAVINDVNHSQEPKPQFGKQSIIRQAVVLLIIYLSLGVVIYWINRDKFTAHETHPVVDALYFCIVTMCTIGYGDITPNSAATKLFSVLFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKRGVQRQSGKSYIIDVKKGRMRIRMKVALALGVVILCIGVGMGVMHFVENLGWLDSFYLSVMSVTTVGYGDQAFKSMTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADIDNNGFVSRSEYVIYKLKEMGKVSEKDVMQISNNFDRLDTGKCGKITLADLLESHH 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35774884 35789084 + CmPI595203_01g023750.1 Cmu01g2375 407881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2375 704 MobiDBLite consensus disorder prediction 350 372 - -
Cmu01g2375 704 SUPERFAMILY EF-hand 642 701 IPR011992 -
Cmu01g2375 704 FunFam Two-pore potassium channel 5 408 518 - -
Cmu01g2375 704 Pfam Ion channel 426 505 IPR013099 -
Cmu01g2375 704 Pfam Ion channel 551 620 IPR013099 -
Cmu01g2375 704 Gene3D - 47 155 IPR036883 GO:0003677(InterPro)
Cmu01g2375 704 SUPERFAMILY Voltage-gated potassium channels 534 640 - -
Cmu01g2375 704 ProSitePatterns EF-hand calcium-binding domain. 648 660 IPR018247 -
Cmu01g2375 704 FunFam Two-pore potassium channel 3 527 641 - -
Cmu01g2375 704 Pfam Double-stranded DNA-binding domain 54 162 IPR002836 GO:0003677(InterPro)
Cmu01g2375 704 SUPERFAMILY Voltage-gated potassium channels 419 505 - -
Cmu01g2375 704 Gene3D - 613 704 - -
Cmu01g2375 704 Gene3D - 416 516 - -
Cmu01g2375 704 PRINTS Two pore domain K+ channel signature 582 591 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cmu01g2375 704 PRINTS Two pore domain K+ channel signature 462 490 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cmu01g2375 704 PANTHER PROGRAMMED CELL DEATH PROTEIN 5 46 163 IPR002836 GO:0003677(InterPro)|GO:0005634(PANTHER)|GO:0005829(PANTHER)
Cmu01g2375 704 FunFam Programmed cell death, putative 47 155 - -
Cmu01g2375 704 Gene3D - 549 612 - -
Cmu01g2375 704 SUPERFAMILY Double-stranded DNA-binding domain 54 161 IPR036883 GO:0003677(InterPro)
Cmu01g2375 704 MobiDBLite consensus disorder prediction 65 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2375 Cmu-Chr1:35774884 Cmu09g2025 Cmu-Chr9:36320271 3.80E-50 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2375 K05389 - csv:101220017 765.377