Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu01g2376 | ATGTCAGATGAAATGTTTAAAGATCTTTTTTATGGCGGGATGGATGAGTACGAGTCTCTAGTGAGAGCTTTTGGGGAATCATCGGATTATTCGAATAATAATAATGAAATTTCGGGGACTCCCATAAATTCTTGTGGATCTTTGTCGTCTTCGGATGCTGGAGCTGAGGAGGATGATTCTGTGAAAGACAAGGATAAGCAGATCGACAAAGAACATGTTGAAGATGGAGGAGAGAGTTCTAAGGCTGGATCAGGTAAATCAAAGAAGAAAGGAGAGAAGAAAGAGAGAGAAGCGAGAGTTGCTTTCATGACGAAGAGCGAGGTTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTTAAGAACAGTGCTTATCCTAGGAGCTATTACAGATGTACAACTCAAAAATGCGGAGTGAAAAAACGAGTAGAGAGATCCTTTGAAGATCCATCCATTGTAATTACAACCTACGAAGGTCAACACAACCACCCAGTCCCGACAACGCTAAGAGGAAACCTATCGGCGGCGAGCAGCGCGTTCTCGCCATCCATGCTAGCACCAATGCCAGTGGTCGGTGGTATTGGGTTTCTATCTACAGAGTTGTTGAGTAATTCTTCCAGCAACAATAACCAGGCCATCAATGGTGGCGCATCCGTTTATTCACATAACAACTTTGACTACACTTATAATGAGCGACAATCAGAATATGGGCTTCTACAGGATATTTTTCCAACTCCTTCATCGTTCTTCAACCGGCAATTGTGA | 780 | 42.69 | MSDEMFKDLFYGGMDEYESLVRAFGESSDYSNNNNEISGTPINSCGSLSSSDAGAEEDDSVKDKDKQIDKEHVEDGGESSKAGSGKSKKKGEKKEREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSFEDPSIVITTYEGQHNHPVPTTLRGNLSAASSAFSPSMLAPMPVVGGIGFLSTELLSNSSSNNNQAINGGASVYSHNNFDYTYNERQSEYGLLQDIFPTPSSFFNRQL | 259 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 35802601 | 35804154 | + | CmPI595203_01g023760.1 | Cmu01g2376 | 407882 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu01g2376 | 259 | FunFam | WRKY transcription factor 57 | 97 | 171 | - | - | |
Cmu01g2376 | 259 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 55 | 209 | IPR044810 | GO:0003700(InterPro) | |
Cmu01g2376 | 259 | SMART | WRKY_cls | 111 | 170 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu01g2376 | 259 | MobiDBLite | consensus disorder prediction | 27 | 98 | - | - | |
Cmu01g2376 | 259 | ProSiteProfiles | WRKY domain profile. | 106 | 171 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu01g2376 | 259 | SUPERFAMILY | WRKY DNA-binding domain | 103 | 171 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu01g2376 | 259 | Gene3D | WRKY domain | 95 | 172 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu01g2376 | 259 | MobiDBLite | consensus disorder prediction | 27 | 54 | - | - | |
Cmu01g2376 | 259 | Pfam | WRKY DNA -binding domain | 112 | 169 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu01g2376 | 259 | MobiDBLite | consensus disorder prediction | 55 | 98 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g2376 | Cmu-Chr1:35802601 | Cmu09g2145 | Cmu-Chr9:37534896 | 2.70E-41 | dispersed | |
Cmu10g1920 | Cmu-Chr10:24634645 | Cmu01g2376 | Cmu-Chr1:35802601 | 5.00E-14 | dispersed | |
Cmu01g2376 | Cmu-Chr1:35802601 | Cmu02g1831 | Cmu-Chr2:32237261 | 4.80E-35 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5632 | PF03106 | WRKY | 8.00E-26 | CL0274 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu01g2376 | - | - | - | 0.0 |