Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2376 ATGTCAGATGAAATGTTTAAAGATCTTTTTTATGGCGGGATGGATGAGTACGAGTCTCTAGTGAGAGCTTTTGGGGAATCATCGGATTATTCGAATAATAATAATGAAATTTCGGGGACTCCCATAAATTCTTGTGGATCTTTGTCGTCTTCGGATGCTGGAGCTGAGGAGGATGATTCTGTGAAAGACAAGGATAAGCAGATCGACAAAGAACATGTTGAAGATGGAGGAGAGAGTTCTAAGGCTGGATCAGGTAAATCAAAGAAGAAAGGAGAGAAGAAAGAGAGAGAAGCGAGAGTTGCTTTCATGACGAAGAGCGAGGTTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTTAAGAACAGTGCTTATCCTAGGAGCTATTACAGATGTACAACTCAAAAATGCGGAGTGAAAAAACGAGTAGAGAGATCCTTTGAAGATCCATCCATTGTAATTACAACCTACGAAGGTCAACACAACCACCCAGTCCCGACAACGCTAAGAGGAAACCTATCGGCGGCGAGCAGCGCGTTCTCGCCATCCATGCTAGCACCAATGCCAGTGGTCGGTGGTATTGGGTTTCTATCTACAGAGTTGTTGAGTAATTCTTCCAGCAACAATAACCAGGCCATCAATGGTGGCGCATCCGTTTATTCACATAACAACTTTGACTACACTTATAATGAGCGACAATCAGAATATGGGCTTCTACAGGATATTTTTCCAACTCCTTCATCGTTCTTCAACCGGCAATTGTGA 780 42.69 MSDEMFKDLFYGGMDEYESLVRAFGESSDYSNNNNEISGTPINSCGSLSSSDAGAEEDDSVKDKDKQIDKEHVEDGGESSKAGSGKSKKKGEKKEREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSFEDPSIVITTYEGQHNHPVPTTLRGNLSAASSAFSPSMLAPMPVVGGIGFLSTELLSNSSSNNNQAINGGASVYSHNNFDYTYNERQSEYGLLQDIFPTPSSFFNRQL 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35802601 35804154 + CmPI595203_01g023760.1 Cmu01g2376 407882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2376 259 FunFam WRKY transcription factor 57 97 171 - -
Cmu01g2376 259 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 55 209 IPR044810 GO:0003700(InterPro)
Cmu01g2376 259 SMART WRKY_cls 111 170 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g2376 259 MobiDBLite consensus disorder prediction 27 98 - -
Cmu01g2376 259 ProSiteProfiles WRKY domain profile. 106 171 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g2376 259 SUPERFAMILY WRKY DNA-binding domain 103 171 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g2376 259 Gene3D WRKY domain 95 172 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g2376 259 MobiDBLite consensus disorder prediction 27 54 - -
Cmu01g2376 259 Pfam WRKY DNA -binding domain 112 169 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g2376 259 MobiDBLite consensus disorder prediction 55 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2376 Cmu-Chr1:35802601 Cmu09g2145 Cmu-Chr9:37534896 2.70E-41 dispersed
Cmu10g1920 Cmu-Chr10:24634645 Cmu01g2376 Cmu-Chr1:35802601 5.00E-14 dispersed
Cmu01g2376 Cmu-Chr1:35802601 Cmu02g1831 Cmu-Chr2:32237261 4.80E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5632 PF03106 WRKY 8.00E-26 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2376 - - - 0.0