Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2379 ATGGCTGCTTCTACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTCTCCCCCAACACCCCTGAAATTCAGGGCAATGGAAGAGTCAGCATGAGGAAAACTGTCACCAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCACCGTCCTACTTGACTGGAGAGTTCCCTGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGACCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGCTGTGTCTTCCCTGAGCTTCTATCTCGCAATGGCGTGAAGTTTGGTGAAGCTGTGTGGTTCAAGGCTGGATCTCAAATCTTCAGCGAGGGAGGGCTCGACTACTTGGGGAATCCCAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCCACTCAGGTTGTGTTGATGGGCGCCGTCGAGGGCTACCGCATTGCCGGCGGCCCGCTCGGGGAGGTGACTGACCCCATCTACCCAGGTGGAAGCTTCGACCCATTGGGTCTGGCTGATGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAGAATTTGGCTGACCACCTTGCTGATCCAGTCAACAACAATGCCTGGGCCTATGCCACAAACTTTGTTCCTGGAAAGTGA 798 55.76 MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35827536 35828333 - CmPI595203_01g023790.1 Cmu01g2379 407885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2379 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Cmu01g2379 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cmu01g2379 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cmu01g2379 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
Cmu01g2379 265 MobiDBLite consensus disorder prediction 1 30 - -
Cmu01g2379 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2379 Cmu-Chr1:35827536 Cmu08g0181 Cmu-Chr8:3890002 4.30E-55 dispersed
Cmu01g2379 Cmu-Chr1:35827536 Cmu01g2380 Cmu-Chr1:35830101 7.60E-153 tandem
Cmu02g0278 Cmu-Chr2:2557272 Cmu01g2379 Cmu-Chr1:35827536 1.00E-120 transposed
Cmu03g1291 Cmu-Chr3:7983741 Cmu01g2379 Cmu-Chr1:35827536 4.40E-75 transposed
Cmu10g1951 Cmu-Chr10:25095395 Cmu01g2379 Cmu-Chr1:35827536 5.00E-136 transposed
Cmu01g2379 Cmu-Chr1:35827536 Cmu02g1834 Cmu-Chr2:32255880 2.60E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2379 K08912 - csv:101221671 524.628