Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2390 ATGATGGCTGTGAATTTAAACGAAAGAGGTATCAGGGGAATAGTATTTACCCTTGAGACGCTTCGGAAGAATCGTGCCCATAAGCTGAAGGTGATTTTTGGGGCTTTTTCGCTTTTGCCATTGCCCTGCGGCCTGCGCCGTTGTGCTCTCCGTCGATCTTCAATTGGCAGCGCTCAGCCCGGACTCGGTCTTCCCGAGTCTGGACCGGTTTGGAGTGCCCTTCTGTTTATATCTTCTTTCGTCCGCTGGCCAATCAGAAGCTCTTCGGTCTCTCAATCAAGGTTCTCTCTCACTCGCTGTCTCTCTCCGCCGGTTCGTCGACGAAGAGCAAAGCAGAGGAAAGTTAGGGACAAGGTAATGGACGTTGGCGAAGAAATTAGGGCAGCTCATAAGCGAGATTTTCTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGACGAGATCAAAGCCATGATTAATCATAAGCGGCATCGGCTCATAATCAACATTTCTGATCTTCATTCTTTCAGAGATCTTGGCCCCAGGGTGCTCAGGAATCCCAGTGAGTACATTCAGCCATTCTGTGACGCAGTCACAGAAACTGCTCGCAGTATCGACCCAAAATACCTTAAGGAAGGAGAGCAAGTTTTGGTGGGCTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCCAGGGAACTTCTCTCTCAGTTTATTGGCTCCATGGTCTGCGTTGAGGGCATTGTTACCAAATGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTCCATTTCTGCCCCACAACTGGAGGTTTTACCAGCCGTGAATACCGTGACATTACATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGACAATGGCAACTTGTTGGTTACTGAGTATGGCCTGTGTAGATATAAAGATCATCAGACCTTATCAATGCAAGAAATGCCTGAAAATTCAGCACCTGGTCAGCTTCCACGAACAGTGGATATCATAGTTGAGGACGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCTATTGTAGGAATATATAAAGCTATTCCAGGAAAAAGCAAGGGCAGCTTGAATGGAGTGTTCAGGACTGTTCTTGTTGCTAACAATGTTTCTCTACTAAACAAAGAGGCTAATGCACCGATATATAGTCCTGAGGACTTGAAGAACATTAAAAAGATAGCGGAAAGAGATGACACATTTGACCTTCTCGGAAATTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAAAAAGCCGTGATACTATTGATGCTTAGTGGAGTGGAGAAGAACTTGAAGAATGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCACAACTTTTAAGGGCAATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCATCTGGTGTCGGGTTAACTGCTGCTGTTACATCAGATCAGGAAACAGGAGAACGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAATGCTCGGTGCAGTGTGGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGATCGTTGACACCAACAAAGAATATAGGTCTTCCAGATTCTCTACTCTCTCGATTTGATCTACTGTTTATTGTATTGGATCAAATGGATCCCGATATTGATCGTCATATTTCGGAGCATGTGTTGCGTATGCACCGGTATCGTTCAGTACTTGATGGAGGTGAGGCTGGGGGCTCAGTGTACGGAAGAGAGGATGAAGCTGAAGCCGACACTTCTGTCTTTGTCAAGTATAATAGAATGCTTCATGGGAAAAAGACCGAACGTGGTCGGAAGCGTGATACCCTCACCATCAAGTTTCTTAAGAAGTACATTCATTATGCTAAGCATAGGATACAACCCGATCTAACTGATGAGGCATCTGAGCAAATTGCAACAGCATATGCAGAACTTAGAAATTCAACTTCAAATGCGAAGACTGGAGGAACTCTTCCAATTACCGCGAGAACCCTGGAAACCATTATACGACTCTCAACTGCCCATGCGAAATTAAAGTTGAGTAGAAAGGTTTCCAAATCTGATGTCGAGGCTGCCTTGAAAGTTCTTAATTTTGCTATATATCATAAAGAGTTGACTGACATGGAAGAGCGTGAGCAAGAAAGAGAGAAAGAATTGGAAAGAAAACGCAGAGCTGAACATCAAACAGTGGAAAATGATAGACCAGAACGTAGTACCAAAAGAAGAGAGGAGGGCTCAAGGACAGATACCATGGAAATTGATGATCCTCCTTCTGAACCTGTACTTGATCTGTCTGCAGAAAGAATAGAAGCATTCAATTCTTTGTTTGGTCAGCACATGCGTGCAAACCACCTGGATGTTATATCTATTGCAGACATTGAGAATGTCGTTAATGCTGCAGCAGATACTCATTACACTACCGCTGAAATAATGTTGCTCTTGCAGAGACTTCAAGATGATAACAGGGTAATGATAGCTGATAGCACGGTGCATATGATATCATGA 2679 44.27 MMAVNLNERGIRGIVFTLETLRKNRAHKLKVIFGAFSLLPLPCGLRRCALRRSSIGSAQPGLGLPESGPVWSALLFISSFVRWPIRSSSVSQSRFSLTRCLSPPVRRRRAKQRKVRDKVMDVGEEIRAAHKRDFLEFLEQDVGKGIYMDEIKAMINHKRHRLIINISDLHSFRDLGPRVLRNPSEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDITSNMGLPTGSVYPTRDDNGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDIIVEDDLVDCCKPGDRVAIVGIYKAIPGKSKGSLNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSVYGREDEAEADTSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEQIATAYAELRNSTSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTDMEEREQEREKELERKRRAEHQTVENDRPERSTKRREEGSRTDTMEIDDPPSEPVLDLSAERIEAFNSLFGQHMRANHLDVISIADIENVVNAAADTHYTTAEIMLLLQRLQDDNRVMIADSTVHMIS 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35886128 35892839 + CmPI595203_01g023900.1 Cmu01g2390 407896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2390 892 SMART mcm 223 759 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cmu01g2390 892 FunFam DNA helicase 124 223 - -
Cmu01g2390 892 Pfam MCM AAA-lid domain 672 755 IPR041562 -
Cmu01g2390 892 ProSiteProfiles MCM family domain profile. 408 614 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cmu01g2390 892 SMART AAA_5 450 603 IPR003593 GO:0016887(InterPro)
Cmu01g2390 892 CDD MCM3 411 757 - -
Cmu01g2390 892 Gene3D - 122 218 - -
Cmu01g2390 892 FunFam DNA helicase 254 308 - -
Cmu01g2390 892 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 300 314 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cmu01g2390 892 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 326 338 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cmu01g2390 892 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 746 761 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cmu01g2390 892 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 577 587 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cmu01g2390 892 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 610 620 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cmu01g2390 892 Pfam MCM N-terminal domain 131 217 IPR027925 -
Cmu01g2390 892 Coils Coil 760 786 - -
Cmu01g2390 892 ProSitePatterns MCM family signature. 517 525 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Cmu01g2390 892 MobiDBLite consensus disorder prediction 766 817 - -
Cmu01g2390 892 MobiDBLite consensus disorder prediction 766 812 - -
Cmu01g2390 892 Pfam MCM OB domain 228 359 IPR033762 -
Cmu01g2390 892 Gene3D - 254 308 - -
Cmu01g2390 892 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 122 839 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER)
Cmu01g2390 892 Pfam MCM P-loop domain 396 618 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cmu01g2390 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 771 IPR027417 -
Cmu01g2390 892 SUPERFAMILY Nucleic acid-binding proteins 132 376 IPR012340 -
Cmu01g2390 892 Gene3D - 228 358 IPR012340 -
Cmu01g2390 892 Gene3D - 390 780 IPR027417 -
Cmu01g2390 892 PRINTS Mini-chromosome maintenance (MCM) protein family signature 449 464 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cmu01g2390 892 PRINTS Mini-chromosome maintenance (MCM) protein family signature 509 523 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cmu01g2390 892 PRINTS Mini-chromosome maintenance (MCM) protein family signature 537 550 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cmu01g2390 892 PRINTS Mini-chromosome maintenance (MCM) protein family signature 588 596 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cmu01g2390 892 PRINTS Mini-chromosome maintenance (MCM) protein family signature 561 573 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2390 K02541 - - csv:101210889 1462.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2390 Cmu-Chr1:35886128 Cmu09g0496 Cmu-Chr9:4585181 2.20E-95 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g382 . . Bda02g00085 . . Bpe01g00814 . . . . Cma03g01388 Cma07g00117 . Car07g00104 Sed14g1703 . . Bhi03g00062 Tan03g2685 Cmetu01g2697 . Hepe04g1984 . . Cla01g02393 Cam01g2506 Cec04g2153 Cco04g2230 . Cmu01g2390 . . . . Cone9ag0904 . Csa06g03777 . Cme08g00150 . . . . . . . . . Cmo03g01381 Cmo07g00117 . . . . . . . . . . . . . . . . . . . . . . Chy02g00156 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g0021 . 106 689 Core DNA Replication Machinery Family AT4G14700 65.5 5.8e-220 761.1
Cmu08g0021 . 106 689 Core DNA Replication Machinery Family AT4G12620 67.8 2.0e-228 789.3
Cmu08g1512 . 55 408 Core DNA Replication Machinery Family AT2G37560 65.0 3.4e-137 485.0
Cmu07g0520 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.6e-152 535.0
Cmu06g0359 . 2 453 Core DNA Replication Machinery Family AT4G29910 60.4 1.2e-152 537.0
Cmu11g0788 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.9 2.8e-92 335.5
Cmu09g2159 . 68 861 Core DNA Replication Machinery Family AT1G79150 59.4 4.9e-246 847.8
Cmu10g2068 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1354.0
Cmu01g2390 . 120 694 Core DNA Replication Machinery Family AT5G46280 80.9 1.4e-268 922.2
Cmu02g0504 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1153.7
Cmu11g0351 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.4
Cmu01g2539 . 7 801 Core DNA Replication Machinery Family AT5G44635 73.3 0.0e+00 1152.9
Cmu09g0496 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cmu02g1962 . 55 521 Core DNA Replication Machinery Family AT2G29680 61.9 5.4e-163 571.2
Cmu02g1962 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 2.6e-143 505.8
Cmu09g0850 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 1.2e-257 885.9
Cmu10g2776 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1081.2
Cmu09g1547 . 9 629 Core DNA Replication Machinery Family AT2G14050 79.0 8.3e-286 979.5
Cmu02g1192 . 1908 2312 Core DNA Replication Machinery Family AT2G20980 56.5 1.3e-116 416.8
Cmu09g0256 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.0e-72 270.0
Cmu11g0623 . 602 769 Core DNA Replication Machinery Family AT1G19080 68.5 1.4e-63 239.6
Cmu11g0623 . 602 769 Core DNA Replication Machinery Family AT3G55490 68.5 1.4e-63 239.6
Cmu05g0160 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 1.5e-49 193.0
Cmu02g1237 . 1 1538 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1750.3
Cmu04g1203 . 151 768 Core DNA Replication Machinery Family AT1G67630 60.1 2.5e-207 718.8
Cmu06g0203 . 1 446 Core DNA Replication Machinery Family AT1G67320 64.3 1.1e-181 633.3
Cmu08g0150 . 26 452 Core DNA Replication Machinery Family AT5G41880 62.8 1.3e-165 579.7
Cmu01g1468 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1797.3
Cmu10g2486 . 1 419 Core DNA Replication Machinery Family AT2G42120 75.9 3.2e-196 681.4
Cmu06g0203 . 1 446 Core DNA Replication Machinery Family AT1G67320 64.3 1.1e-181 633.3
Cmu01g0526 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.8 3.3e-37 151.4
Cmu02g2187 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2981.8
Cmu09g1964 . 85 1107 Core DNA Replication Machinery Family AT1G08260 76.7 0.0e+00 1671.0
Cmu02g2187 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.1 0.0e+00 2948.3
Cmu09g1964 . 107 1107 Core DNA Replication Machinery Family AT2G27120 74.7 0.0e+00 1599.3
Cmu04g1310 . 1 258 Core DNA Replication Machinery Family AT5G22110 77.5 2.9e-121 432.6
Cmu04g1309 . 638 804 Core DNA Replication Machinery Family AT5G22110 60.5 1.2e-47 188.0
Cmu02g2237 . 50 974 Core DNA Replication Machinery Family AT5G22010 63.0 1.1e-304 1042.7
Cmu10g1183 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 3.8e-173 604.4
Cmu04g0515 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.1e-178 622.9
Cmu11g1591 . 119 437 Core DNA Replication Machinery Family AT1G21690 81.6 2.1e-144 508.8
Cmu08g0537 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.5 2.5e-154 542.0
Cmu11g0152 . 26 607 Core DNA Replication Machinery Family AT2G06510 67.9 6.8e-245 843.6
Cmu10g0955 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.4 1.0e-195 680.2
Cmu06g1609 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.3 9.9e-249 856.3
Cmu10g0955 . 10 811 Core DNA Replication Machinery Family AT5G45400 50.3 1.8e-227 786.2
Cmu06g1609 . 1 618 Core DNA Replication Machinery Family AT5G61000 66.1 7.9e-241 830.1
Cmu10g0955 . 5 797 Core DNA Replication Machinery Family AT4G19130 53.7 2.9e-224 775.4
Cmu03g2373 . 1 401 Core DNA Replication Machinery Family AT5G26680 82.8 2.3e-188 655.2
Cmu05g0297 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.3 1.2e-297 1019.6
Cmu07g1546 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 1.3e-115 412.9
Cmu02g2147 . 2 740 Core DNA Replication Machinery Family AT1G08130 69.4 8.3e-288 986.5
Cmu02g2147 . 162 740 Core DNA Replication Machinery Family AT1G49250 69.3 2.9e-233 805.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011182 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31