Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu01g2426 | ATGATTGAGATTGATTCAGAGAAAGAGTTTTTTGTGTTTGTTCGTTGGTTTCGTCGTTCTCGTTTCGTTTGCCGATTGAAGGGAGAAGATGAGTATGGTAAAGTCTCAGATATGGCTTCCAGGTCCAGCAGTCATAGCAAATCGCGGGTGGGGAGATACGAGCTGGGACGAACCCTTGGAGAGGGCAGCTTCGCCAAGGTTAAGTTCGCTCGGAATTGCGAGACGGGAGAGAACGTAGCCATCAAAATCCTCGACAAAGAGGATATTCTCAAACACAAGATGATCGGGCAGATTAAACGTGAAATATCCACTATGAAACTCATTAGACATCCAAATGTCATTCGCATGTACGAGGTGATGGCTAGCAAGACCAAGATATATATTGTTTTGGAATTTGTAACCGGTGGAGAACTATTCGCCAAAATTGCGTGTAAGGGAAGATTGAAAGAAGATGAAGCAAGAAAGTATTTTCAGCAGTTAATAAATGCAGTGGATTATTGCCATAGTAGAGGTGTTTGTCATCGAGACCTAAAGCCAGAGAATTTATTATTGGATGCTAGTGGCGTTCTAAAAATTTCAGATTTTGGATTGAGTGCTCTACCTCAACAAGTTCGAGGTGATGGATTACTTCACACAACATGCGGAACGCCCAATTATGTTGCTCCAGAGGTTATCAACAATAAAGGGTACTATGGAGCAAAGGCTGACCTATGGTCATGTGGGGTTATCCTTTTTGTCCTCATGGCAGGCTACTTGCCGTTTGAAGACTCCAATCTCATGGCATTGTATAAAAAGATATTCAAGGCAGACTTCACATGTCCTCCATGGTTCTCCTCTAGTGCCAAGAAATTAATCAAGAGAATCCTGGATCCGAATCCATTAACTAGAATTACAATTGCTGAAGTCCTTGAGAATGATTGGTTTAAGAAAGGATACAAGCCACCCACTTTTGAAAATGACGAAATCAGTATTGATAACGTTGATGACATCTTTAATGAATCAGGGGCCACTGATAACCTTGTTGTTGAGAGGAGAGAAGATAGATCTGCATCACTTGCATCACCTGTCACCATGAATGCATTTGAGCTCATCTCGAAATCTCGGGGCCTCAACCTTGCCACTCTTTTTGAGAAGCAAATGGGGATAATTAAACGTGAAACGAGATTCACATCCAATTGTCCAGCAGATGAAATCATTTCGAAGATAAAAAACACTGCTGTTCCTTTGGGCTTTGATGTGAAGATTAATAACTTCAAGATGAAGCTCCAAGGGGAAAAAACTGGACGCAAAGGTCATTTATCAGTTGCAACAGAGATTTTTCAGGTTGCTCCTTCCTTGCATATGGTGGAGCTTCGCAAAGCTGGAGGCGACACTTTAGAATTTCAAAAGTTCTACAATAACCTCTCAACTGGACTGAAAGATATCGTATGGAGATACGGAGACGAGATGGAGCAGGAAAGTAATGGTGCGGATTGTTGA | 1479 | 41.85 | MIEIDSEKEFFVFVRWFRRSRFVCRLKGEDEYGKVSDMASRSSSHSKSRVGRYELGRTLGEGSFAKVKFARNCETGENVAIKILDKEDILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFAKIACKGRLKEDEARKYFQQLINAVDYCHSRGVCHRDLKPENLLLDASGVLKISDFGLSALPQQVRGDGLLHTTCGTPNYVAPEVINNKGYYGAKADLWSCGVILFVLMAGYLPFEDSNLMALYKKIFKADFTCPPWFSSSAKKLIKRILDPNPLTRITIAEVLENDWFKKGYKPPTFENDEISIDNVDDIFNESGATDNLVVERREDRSASLASPVTMNAFELISKSRGLNLATLFEKQMGIIKRETRFTSNCPADEIISKIKNTAVPLGFDVKINNFKMKLQGEKTGRKGHLSVATEIFQVAPSLHMVELRKAGGDTLEFQKFYNNLSTGLKDIVWRYGDEMEQESNGADC | 492 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 36190940 | 36196461 | + | CmPI595203_01g024260.1 | Cmu01g2426 | 407932 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu01g2426 | 492 | FunFam | Non-specific serine/threonine protein kinase | 353 | 478 | - | - | |
Cmu01g2426 | 492 | CDD | CIPK_C | 359 | 474 | - | - | |
Cmu01g2426 | 492 | Gene3D | Kinase associated domain 1, KA1 | 353 | 478 | - | - | |
Cmu01g2426 | 492 | FunFam | Non-specific serine/threonine protein kinase | 44 | 132 | - | - | |
Cmu01g2426 | 492 | ProSitePatterns | Protein kinases ATP-binding region signature. | 59 | 82 | IPR017441 | GO:0005524(InterPro) | |
Cmu01g2426 | 492 | CDD | STKc_SnRK3 | 52 | 307 | - | - | |
Cmu01g2426 | 492 | Gene3D | Phosphorylase Kinase; domain 1 | 41 | 132 | - | - | |
Cmu01g2426 | 492 | FunFam | Non-specific serine/threonine protein kinase | 46 | 349 | - | - | |
Cmu01g2426 | 492 | Pfam | Protein kinase domain | 53 | 308 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu01g2426 | 492 | SUPERFAMILY | Protein kinase-like (PK-like) | 50 | 317 | IPR011009 | - | |
Cmu01g2426 | 492 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 172 | 184 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu01g2426 | 492 | Gene3D | Transferase(Phosphotransferase) domain 1 | 133 | 315 | - | - | |
Cmu01g2426 | 492 | SMART | serkin_6 | 53 | 308 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu01g2426 | 492 | ProSiteProfiles | Protein kinase domain profile. | 53 | 308 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu01g2426 | 492 | Pfam | NAF domain | 355 | 414 | IPR004041 | GO:0007165(InterPro) | |
Cmu01g2426 | 492 | ProSiteProfiles | NAF domain profile. | 353 | 377 | IPR018451 | GO:0007165(InterPro) | |
Cmu01g2426 | 492 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 37 | 466 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g2426 | Cmu-Chr1:36190940 | Cmu02g2394 | Cmu-Chr2:37406086 | 3.60E-172 | dispersed | |
Cmu01g2426 | Cmu-Chr1:36190940 | Cmu03g1253 | Cmu-Chr3:7456159 | 7.60E-215 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75266 | PF00069 | Pkinase | 2.00E-74 | CL0016 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu01g2426 | - | - | - | 0.0 |