Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2426 ATGATTGAGATTGATTCAGAGAAAGAGTTTTTTGTGTTTGTTCGTTGGTTTCGTCGTTCTCGTTTCGTTTGCCGATTGAAGGGAGAAGATGAGTATGGTAAAGTCTCAGATATGGCTTCCAGGTCCAGCAGTCATAGCAAATCGCGGGTGGGGAGATACGAGCTGGGACGAACCCTTGGAGAGGGCAGCTTCGCCAAGGTTAAGTTCGCTCGGAATTGCGAGACGGGAGAGAACGTAGCCATCAAAATCCTCGACAAAGAGGATATTCTCAAACACAAGATGATCGGGCAGATTAAACGTGAAATATCCACTATGAAACTCATTAGACATCCAAATGTCATTCGCATGTACGAGGTGATGGCTAGCAAGACCAAGATATATATTGTTTTGGAATTTGTAACCGGTGGAGAACTATTCGCCAAAATTGCGTGTAAGGGAAGATTGAAAGAAGATGAAGCAAGAAAGTATTTTCAGCAGTTAATAAATGCAGTGGATTATTGCCATAGTAGAGGTGTTTGTCATCGAGACCTAAAGCCAGAGAATTTATTATTGGATGCTAGTGGCGTTCTAAAAATTTCAGATTTTGGATTGAGTGCTCTACCTCAACAAGTTCGAGGTGATGGATTACTTCACACAACATGCGGAACGCCCAATTATGTTGCTCCAGAGGTTATCAACAATAAAGGGTACTATGGAGCAAAGGCTGACCTATGGTCATGTGGGGTTATCCTTTTTGTCCTCATGGCAGGCTACTTGCCGTTTGAAGACTCCAATCTCATGGCATTGTATAAAAAGATATTCAAGGCAGACTTCACATGTCCTCCATGGTTCTCCTCTAGTGCCAAGAAATTAATCAAGAGAATCCTGGATCCGAATCCATTAACTAGAATTACAATTGCTGAAGTCCTTGAGAATGATTGGTTTAAGAAAGGATACAAGCCACCCACTTTTGAAAATGACGAAATCAGTATTGATAACGTTGATGACATCTTTAATGAATCAGGGGCCACTGATAACCTTGTTGTTGAGAGGAGAGAAGATAGATCTGCATCACTTGCATCACCTGTCACCATGAATGCATTTGAGCTCATCTCGAAATCTCGGGGCCTCAACCTTGCCACTCTTTTTGAGAAGCAAATGGGGATAATTAAACGTGAAACGAGATTCACATCCAATTGTCCAGCAGATGAAATCATTTCGAAGATAAAAAACACTGCTGTTCCTTTGGGCTTTGATGTGAAGATTAATAACTTCAAGATGAAGCTCCAAGGGGAAAAAACTGGACGCAAAGGTCATTTATCAGTTGCAACAGAGATTTTTCAGGTTGCTCCTTCCTTGCATATGGTGGAGCTTCGCAAAGCTGGAGGCGACACTTTAGAATTTCAAAAGTTCTACAATAACCTCTCAACTGGACTGAAAGATATCGTATGGAGATACGGAGACGAGATGGAGCAGGAAAGTAATGGTGCGGATTGTTGA 1479 41.85 MIEIDSEKEFFVFVRWFRRSRFVCRLKGEDEYGKVSDMASRSSSHSKSRVGRYELGRTLGEGSFAKVKFARNCETGENVAIKILDKEDILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFAKIACKGRLKEDEARKYFQQLINAVDYCHSRGVCHRDLKPENLLLDASGVLKISDFGLSALPQQVRGDGLLHTTCGTPNYVAPEVINNKGYYGAKADLWSCGVILFVLMAGYLPFEDSNLMALYKKIFKADFTCPPWFSSSAKKLIKRILDPNPLTRITIAEVLENDWFKKGYKPPTFENDEISIDNVDDIFNESGATDNLVVERREDRSASLASPVTMNAFELISKSRGLNLATLFEKQMGIIKRETRFTSNCPADEIISKIKNTAVPLGFDVKINNFKMKLQGEKTGRKGHLSVATEIFQVAPSLHMVELRKAGGDTLEFQKFYNNLSTGLKDIVWRYGDEMEQESNGADC 492
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 36190940 36196461 + CmPI595203_01g024260.1 Cmu01g2426 407932
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2426 492 FunFam Non-specific serine/threonine protein kinase 353 478 - -
Cmu01g2426 492 CDD CIPK_C 359 474 - -
Cmu01g2426 492 Gene3D Kinase associated domain 1, KA1 353 478 - -
Cmu01g2426 492 FunFam Non-specific serine/threonine protein kinase 44 132 - -
Cmu01g2426 492 ProSitePatterns Protein kinases ATP-binding region signature. 59 82 IPR017441 GO:0005524(InterPro)
Cmu01g2426 492 CDD STKc_SnRK3 52 307 - -
Cmu01g2426 492 Gene3D Phosphorylase Kinase; domain 1 41 132 - -
Cmu01g2426 492 FunFam Non-specific serine/threonine protein kinase 46 349 - -
Cmu01g2426 492 Pfam Protein kinase domain 53 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2426 492 SUPERFAMILY Protein kinase-like (PK-like) 50 317 IPR011009 -
Cmu01g2426 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2426 492 Gene3D Transferase(Phosphotransferase) domain 1 133 315 - -
Cmu01g2426 492 SMART serkin_6 53 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2426 492 ProSiteProfiles Protein kinase domain profile. 53 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2426 492 Pfam NAF domain 355 414 IPR004041 GO:0007165(InterPro)
Cmu01g2426 492 ProSiteProfiles NAF domain profile. 353 377 IPR018451 GO:0007165(InterPro)
Cmu01g2426 492 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 37 466 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2426 Cmu-Chr1:36190940 Cmu02g2394 Cmu-Chr2:37406086 3.60E-172 dispersed
Cmu01g2426 Cmu-Chr1:36190940 Cmu03g1253 Cmu-Chr3:7456159 7.60E-215 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75266 PF00069 Pkinase 2.00E-74 CL0016 Cmu PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2426 - - - 0.0