Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2432 ATGAAGTCGGCCATTGAAGAGTTGTTCGTTGTTGCCTTCTTCGAAGATACTTTGGTGCTTCAAATTTGTCGGTCAATTTCTTTTTGTTTGTTGGATCTCACTGAAATGAGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCCCCGGAAGGGGAGGGGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCGGGCCCTCTTGTTTCTCTACCTGCTGTTGGAAGTCGGGTTGTTTATTTTCCACAGGGTCACAGCGAGCAGGTTGCCATATCAACCAACAGAGAAGTCGATGCCCATATACCGAGTTATCCAAGCTTGCCGCCCCAACTTATCTGTCAGCTTCACAATGTTACAATGCATGCAGATGTTGAGACAGATGAAGTGTATGCCCAAATGACCTTGCAACCGCTCACTGCTCAAGAGCAAAAGGAGCCTTATCTTCCAGCTGAGTTGGGTGCCCCCAGCAAACAACCAACCAATTACTTTTGTAAAACATTAACAGCAAGTGACACAAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAGAAAGTGTTTCCTCCACTGGACTTTTCTCAGCAGCCACCGGCTCAGGAGTTAATTGCCAGGGATCTGCACGATAATGAATGGAAATTTAGGCATATCTTTCGTGGCCAGCCCAAACGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCAGTTATCTTTATTTGGAATGAAAAAAATCAATTACTATTGGGGATCCGTCGAGCTAATCGACCACAAACGGTAATGCCCTCGTCCGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCTACAAATAGCCGGTTCACGATATTTTATAATCCAAGGGCTAGCCCGTCAGAGTTCATCATACCTCTAGCCAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCAGTTGGTATGCGCTTTAGAATGCTATTTGAAACGGAAGAATCAAGTGTTCGTCGCTACATGGGCACTATTACTGGTATCGGTGATTTAGATTCTACCCGGTGGCCAAATTCACACTGGCGCTCCGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCCTTATGGGAGATCGAGCCACTTACAACCTTCCCAATGTATCCTTCTCCATTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTTCCTTCTTTCCATGGTCTCAAAGAGGATGATCTGGGATTGAATTCTCAACTAATGTGGCTTCGGGGAGATGGTCTAGATCGTGGAATTCAACCTCTGAACTTCCCCGGAATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATGCTTCAATGGTGGGTCTGCAGCCAGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACTGTAGATCCTGCTAAGGTGCAGGCTGCTTCGCTTCTTCAATTCCAACAAACCCAAAATCTTCCCAACAGACCTACTTTCATGCCACCTCAGATGTTGCAGCCTCAGCCTCAACCTCAGCCTCCACAGACCTTTCTTCAAGGTGATGAAAACCAACATCTCTCTCATTCTCAGGCCCAAAGCCAGCCTACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACCACCAGCAGCAGCAGCAGCAGCAACAACAACAGCAACAACCACAACAGCAAGTGTTTGATCACCAACAAATTCCAAGTCCCATATCTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCAATCCCAATCCCTGCAAACTATTCCTCCATTATGTCGGCAGCAAAGTTTTTCTGATTCTAATGCCAACCATGTAACGAGTCCCATCATTTCACCCTTGCACAGCCTGTTAGGTTCATTTCCGCAAGATGAATCATCTCAGTTGCTTAATCTGCCTCGAACCAATCCCATGATACATTCATCTACTTGGCCGTCAAAGCGAGCTGCAGTGGATCCTCTTCTCTCTTCTGGAAATTCTCAGTTTGTTCTTTCCCAAGGGGAAAACATGGGGACAACTCAGACTAATATCTCTCAGAATGCTATTTTGTTGCCGCCTTTTCCTGGAAGAGAGTGTTCATTAGATCAAGGGAATGCTGATCCGCAGAGTAATCTTCTCTTTGGTGTCAATATAGAGCCTTCATCTCTTTTAATGCAGAATGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCATCCAATTATGTGAATACTGCTGGTAACAACTTCTCTGCCAGTCCAACTGGAACAGGGACACCTTCCAATTGCATTGAGGATTCAGGTTTCTTGCAGTCTCCAGAAAACACAGGCCAAGTAAACCCACCAACCAGAACCTTTGTAAAGGTTTACAAGTCGGGGTCCTTCGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAGCTACGCAGTGAGCTCGCTCACATGTTCGGCCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCCGGAATTTGTCAACAGTGTGTGGTGTATCAAAATCCTTTCACCCGAGGAAGTGCAGGAGATGGGCAAACGCGGCCTAGAGCTCTTGAACTCAGTCCCGATTCAGAGGCTCTCAAATGGCAGTTGTGATAACTACGCCAATAGACAGGAATCATCCAGAAATTTGAGTACCGGGATAACTTCTGTCGGGTCTCTCGAGTACCAGGACAGCTCTGTATGA 2844 46.87 MKSAIEELFVVAFFEDTLVLQICRSISFCLLDLTEMRLSTAGFSPQAPEGEGRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGFPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQPLNFPGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKVQAASLLQFQQTQNLPNRPTFMPPQMLQPQPQPQPPQTFLQGDENQHLSHSQAQSQPTVLQQEIKHQTFNNHQQQQQQQQQQQQPQQQVFDHQQIPSPISTMSQFSSASQSQSQSLQTIPPLCRQQSFSDSNANHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNPMIHSSTWPSKRAAVDPLLSSGNSQFVLSQGENMGTTQTNISQNAILLPPFPGRECSLDQGNADPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFSSNYVNTAGNNFSASPTGTGTPSNCIEDSGFLQSPENTGQVNPPTRTFVKVYKSGSFGRSLDISKFSSYHQLRSELAHMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPEEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEYQDSSV 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36248281 36253801 - CmPI595203_01g024320.1 Cmu01g2432 407938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2432 947 FunFam Auxin response factor 326 398 - -
Cmu01g2432 947 Pfam Auxin response factor 288 370 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu01g2432 947 CDD B3_DNA 161 262 IPR003340 GO:0003677(InterPro)
Cmu01g2432 947 FunFam Auxin response factor 160 264 - -
Cmu01g2432 947 Gene3D - 805 897 - -
Cmu01g2432 947 Gene3D - 326 398 - -
Cmu01g2432 947 MobiDBLite consensus disorder prediction 508 584 - -
Cmu01g2432 947 SUPERFAMILY CAD & PB1 domains 800 883 - -
Cmu01g2432 947 MobiDBLite consensus disorder prediction 515 529 - -
Cmu01g2432 947 Gene3D - 160 263 IPR015300 -
Cmu01g2432 947 FunFam Auxin response factor 803 897 - -
Cmu01g2432 947 Pfam AUX/IAA family 805 897 IPR033389 -
Cmu01g2432 947 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 55 899 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu01g2432 947 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677(InterPro)
Cmu01g2432 947 ProSiteProfiles PB1 domain profile. 808 892 IPR053793 -
Cmu01g2432 947 MobiDBLite consensus disorder prediction 592 611 - -
Cmu01g2432 947 Pfam B3 DNA binding domain 162 264 IPR003340 GO:0003677(InterPro)
Cmu01g2432 947 SUPERFAMILY DNA-binding pseudobarrel domain 147 291 IPR015300 -
Cmu01g2432 947 SMART B3_2 162 264 IPR003340 GO:0003677(InterPro)
Cmu01g2432 947 MobiDBLite consensus disorder prediction 530 584 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2432 Cmu-Chr1:36248281 Cmu11g0026 Cmu-Chr11:729583 5.90E-14 dispersed
Cmu01g0800 Cmu-Chr1:9109490 Cmu01g2432 Cmu-Chr1:36248281 5.40E-171 transposed
Cmu01g0803 Cmu-Chr1:9130476 Cmu01g2432 Cmu-Chr1:36248281 2.20E-91 transposed
Cmu03g1453 Cmu-Chr3:10257856 Cmu01g2432 Cmu-Chr1:36248281 8.20E-13 transposed
Cmu05g1895 Cmu-Chr5:28896013 Cmu01g2432 Cmu-Chr1:36248281 4.40E-174 transposed
Cmu11g0133 Cmu-Chr11:1891703 Cmu01g2432 Cmu-Chr1:36248281 2.40E-171 transposed
Cmu11g1159 Cmu-Chr11:22023493 Cmu01g2432 Cmu-Chr1:36248281 3.10E-166 transposed
Cmu01g2432 Cmu-Chr1:36248281 Cmu03g1247 Cmu-Chr3:7328950 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5637 PF02309 AUX_IAA 3.70E-07 CL0072 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2432 K14486 - csv:101210406 1681.38