Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2458 ATGATGAAGCCCGTAAAATCATGGGCCAATCACACGAATGTGGAAGACATGACTATGAGATTTGACTTCATTTTTGTACTGGAGAACAAGCTTGGGGGTATAAGTCCAATATGGAAGCCTTCATACAACATGAGCATTGAACTGGATTTTCTTGGGATATTTGGATTGTCATATAGCTTTGTAAAGATTAGGCCCTTAGTGTTCTTTCAATTAACGGAAGTCAAAGAGCAGACTGTTATAAGATTAAACCCTGATTTATTAACCATTCAGGTTTCATTTGGTGTGCACTGCAATCCCATGACTTCTTCTATCCATGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGGATCTCAGAATCATTCTTCATCAATCGTAAATGGACTAAGTCAACCCACCATCGTAACTCCAAATCAGTATGTAACATCTCCTCAAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCGATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGCGCAAAAGCTGAATCCGAAAATAAAGCCCTAAAGTCTAGGAAGCCATATTTGCATGAATCTCGACACCTGCATGCATTAAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAGTCAAATAAAAATGAGAATCATCAAAATGAAGTGGCATCAGCACATCTCAACAATTGTAAGGAAATTGAGGTCCCAATACCAGCTTCAGTTGTCTTAATTGGCACAGTACATAGTAACGCTGATGTTGCTGAAACTTTTATGGGAAGCTTTGTAATGGAAGGAGATGGAGTCGACAAGAGGAAACTACCTGAACATCCTTTTTTTCTCAAGAAACCTGAACATCTTTTGGGACTGGATCTAAGTGTTGACAGTTTTCTCTTATTTGCTTGTTCCTGCATTGAAGTAGCAGAAGAAGAAATGAGATTCTGTGGAGTCCCTATCAAAGGGCCATTCCTTGGAAATCAAACACTTTCTTTTGCTCATGGTCCTCTCCTGGTCAAGCCACTCTAA 1197 41.52 MMKPVKSWANHTNVEDMTMRFDFIFVLENKLGGISPIWKPSYNMSIELDFLGIFGLSYSFVKIRPLVFFQLTEVKEQTVIRLNPDLLTIQVSFGVHCNPMTSSIHDYSDNGEADEQQKYSGSQNHSSSIVNGLSQPTIVTPNQYVTSPQVGAGHAMAPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASAHLNNCKEIEVPIPASVVLIGTVHSNADVAETFMGSFVMEGDGVDKRKLPEHPFFLKKPEHLLGLDLSVDSFLLFACSCIEVAEEEMRFCGVPIKGPFLGNQTLSFAHGPLLVKPL 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36536621 36544620 - CmPI595203_01g024580.1 Cmu01g2458 407964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2458 398 ProSitePatterns NF-YA/HAP2 subunit signature. 215 235 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cmu01g2458 398 Gene3D - 210 271 - -
Cmu01g2458 398 SMART cbf3 209 270 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g2458 398 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 109 279 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cmu01g2458 398 ProSiteProfiles NF-YA/HAP2 family profile. 210 270 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g2458 398 MobiDBLite consensus disorder prediction 104 132 - -
Cmu01g2458 398 MobiDBLite consensus disorder prediction 114 132 - -
Cmu01g2458 398 PRINTS CCAAT-binding transcription factor subunit B signature 244 267 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g2458 398 PRINTS CCAAT-binding transcription factor subunit B signature 213 235 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g2458 398 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 212 267 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2458 Cmu-Chr1:36536621 Cmu02g2297 Cmu-Chr2:36524294 3.30E-27 dispersed
Cmu01g2458 Cmu-Chr1:36536621 Cmu09g0394 Cmu-Chr9:3788705 1.40E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5640 PF02045 CBFB_NFYA 1.20E-25 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2458 K08064 - csv:101205549 317.005