Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2458 ATGATGAAGCCCGTAAAATCATGGGCCAATCACACGAATGTGGAAGACATGACTATGAGATTTGACTTCATTTTTGTACTGGAGAACAAGCTTGGGGGTATAAGTCCAATATGGAAGCCTTCATACAACATGAGCATTGAACTGGATTTTCTTGGGATATTTGGATTGTCATATAGCTTTGTAAAGATTAGGCCCTTAGTGTTCTTTCAATTAACGGAAGTCAAAGAGCAGACTGTTATAAGATTAAACCCTGATTTATTAACCATTCAGGTTTCATTTGGTGTGCACTGCAATCCCATGACTTCTTCTATCCATGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGGATCTCAGAATCATTCTTCATCAATCGTAAATGGACTAAGTCAACCCACCATCGTAACTCCAAATCAGTATGTAACATCTCCTCAAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCGATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGCGCAAAAGCTGAATCCGAAAATAAAGCCCTAAAGTCTAGGAAGCCATATTTGCATGAATCTCGACACCTGCATGCATTAAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAGTCAAATAAAAATGAGAATCATCAAAATGAAGTGGCATCAGCACATCTCAACAATTGTAAGGAAATTGAGGTCCCAATACCAGCTTCAGTTGTCTTAATTGGCACAGTACATAGTAACGCTGATGTTGCTGAAACTTTTATGGGAAGCTTTGTAATGGAAGGAGATGGAGTCGACAAGAGGAAACTACCTGAACATCCTTTTTTTCTCAAGAAACCTGAACATCTTTTGGGACTGGATCTAAGTGTTGACAGTTTTCTCTTATTTGCTTGTTCCTGCATTGAAGTAGCAGAAGAAGAAATGAGATTCTGTGGAGTCCCTATCAAAGGGCCATTCCTTGGAAATCAAACACTTTCTTTTGCTCATGGTCCTCTCCTGGTCAAGCCACTCTAA 1197 41.52 MMKPVKSWANHTNVEDMTMRFDFIFVLENKLGGISPIWKPSYNMSIELDFLGIFGLSYSFVKIRPLVFFQLTEVKEQTVIRLNPDLLTIQVSFGVHCNPMTSSIHDYSDNGEADEQQKYSGSQNHSSSIVNGLSQPTIVTPNQYVTSPQVGAGHAMAPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASAHLNNCKEIEVPIPASVVLIGTVHSNADVAETFMGSFVMEGDGVDKRKLPEHPFFLKKPEHLLGLDLSVDSFLLFACSCIEVAEEEMRFCGVPIKGPFLGNQTLSFAHGPLLVKPL 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36536621 36544620 - CmPI595203_01g024580.1 Cmu01g2458 407964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2458 398 ProSitePatterns NF-YA/HAP2 subunit signature. 215 235 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cmu01g2458 398 Gene3D - 210 271 - -
Cmu01g2458 398 SMART cbf3 209 270 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g2458 398 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 109 279 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cmu01g2458 398 ProSiteProfiles NF-YA/HAP2 family profile. 210 270 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g2458 398 MobiDBLite consensus disorder prediction 104 132 - -
Cmu01g2458 398 MobiDBLite consensus disorder prediction 114 132 - -
Cmu01g2458 398 PRINTS CCAAT-binding transcription factor subunit B signature 244 267 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g2458 398 PRINTS CCAAT-binding transcription factor subunit B signature 213 235 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g2458 398 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 212 267 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2458 K08064 - - csv:101205549 317.005
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2458 Cmu-Chr1:36536621 Cmu02g2297 Cmu-Chr2:36524294 3.30E-27 dispersed
Cmu01g2458 Cmu-Chr1:36536621 Cmu09g0394 Cmu-Chr9:3788705 1.40E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu02g2297 . 150 403 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.2 8.4e-54 207.6
Cmu03g1930 . 58 231 CCAAT-HAP2 Transcription Factor Family AT3G20910 60.8 1.6e-45 180.3
Cmu01g2458 . 100 276 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.8 4.1e-47 184.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5640 PF02045 CBFB_NFYA 1.20E-25 No_clan Cmu TF