Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2459 ATGAATAATCGCACACTGGAACTTGGGAGGCCTGGCTCAGGCAAAAGAAGATTAAGGGACCTATTGCTTCTAAAGGATAATCGCTTTTGTGCAGATTGTCGCGCTGCAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGTGGTGTTCACAGAAGCCTCGGTTCACATATATCAAAGGTGTTATCAGTGACGTTGGATGAATGGAATGATGATGAAATTGACGCCATGATAGAAGTTGGAGGAAATTCTTCTGCAAATGCTATTTATGAAGCCTTTATTCCTGAGGGATATTCAAAACCTGGACCAGATGCTACCCATGAACAACGTTCAAAATTTATTCGGTCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCATCCAACTCTGACAAAAGCAATATCCAAGCAAGCTTTTCTTCAAAGATCATGAACAGTTTTCGTTCAAATCCTTCACAAAAATCACTATCGCAGGAAGGTATGGTAGAGTATATTGGATTATTGAAGGTCAAAGTGATTAAAGGAACAAACTTAGCTATCAGGGATATGATGTCTAGCGATCCTTATGTAGTCATGACTCTTGGACAACAGACTGTCCAGACAAGTGTAGTCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTGACGCTATCTGTACCTCAAGGTTTTGGAACCATAAAGTTGCAAGTATACGATTATGACACATTTTCAGCAGATGACATAATGGGAGAAGCAGAGATTGATCTCCAGCCCTTGATAACATCCGCCATGGCATTTGGAGATGCTGGAATGTTTTCAAACATGCAAATTGGAAAATGGCTGAAATCGCATGATAACGCTCTCATAGCCGATAGCACCGTTAATATTGTTGATGGGAAGGTGAAGCAAGAGATATCACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTTGAATGGATGGCTCTTGAACAATAG 1002 40.22 MNNRTLELGRPGSGKRRLRDLLLLKDNRFCADCRAADPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWNDDEIDAMIEVGGNSSANAIYEAFIPEGYSKPGPDATHEQRSKFIRSKYELQEFLKPSLRILSSNSDKSNIQASFSSKIMNSFRSNPSQKSLSQEGMVEYIGLLKVKVIKGTNLAIRDMMSSDPYVVMTLGQQTVQTSVVRSNLNPVWNEELTLSVPQGFGTIKLQVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALIADSTVNIVDGKVKQEISLKLQNVESGELDLELEWMALEQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36550089 36553831 + CmPI595203_01g024590.1 Cmu01g2459 407965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2459 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Cmu01g2459 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Cmu01g2459 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Cmu01g2459 333 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Cmu01g2459 333 Gene3D C2 domain 174 333 IPR035892 -
Cmu01g2459 333 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Cmu01g2459 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 143 IPR001164 GO:0005096(InterPro)
Cmu01g2459 333 Gene3D Arf GTPase activating protein 6 135 IPR038508 -
Cmu01g2459 333 SMART C2_3c 178 273 IPR000008 -
Cmu01g2459 333 CDD ArfGap 27 124 - -
Cmu01g2459 333 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cmu01g2459 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 2 333 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cmu01g2459 333 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 175 333 - -
Cmu01g2459 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 177 321 IPR035892 -
Cmu01g2459 333 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Cmu01g2459 333 CDD C2_ArfGAP 176 320 - -
Cmu01g2459 333 Pfam C2 domain 177 265 IPR000008 -
Cmu01g2459 333 ProSiteProfiles C2 domain profile. 159 274 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2459 Cmu-Chr1:36550089 Cmu06g1488 Cmu-Chr6:26154725 1.10E-34 dispersed
Cmu01g0743 Cmu-Chr1:8379126 Cmu01g2459 Cmu-Chr1:36550089 1.20E-90 transposed
Cmu01g1451 Cmu-Chr1:28061299 Cmu01g2459 Cmu-Chr1:36550089 4.30E-24 transposed
Cmu05g2722 Cmu-Chr5:35680536 Cmu01g2459 Cmu-Chr1:36550089 2.80E-89 transposed
Cmu11g1836 Cmu-Chr11:30523876 Cmu01g2459 Cmu-Chr1:36550089 1.50E-24 transposed
Cmu01g2459 Cmu-Chr1:36550089 Cmu03g1226 Cmu-Chr3:6860850 1.50E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2459 K12486 - csv:101218116 636.336