Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2484 ATGTTGTTGTTGTTTGAGATGGAGAATTATGAAGAAGGTGATTTGACTGATATTGTGAGAGGAGGAAGCTCAAGATCAAGATCAACAACAAGAAGCTCCACTTCTCATTGCAAAACGGAATTGGGTGATCAAGATGAAGATCAAGATTCTCCCTTTTATTCTTCATCACAAGATAACAATTACAATCCTCAGTGGAGTAGCTCCCAATTTTCATCACAACTACTACTACTACAAGATCATCATCATCATCATCATCATCATCAATACAGTTTTGGGGATCCATTTTGTAGTACTGTTGCTGCTTCACTTGATCTTCATCAAGAGCTGGATAATACTAATAATAATACTTTTTTCAATGGAATTACTACTACTACTACTACTTCTACTCAAGATGAGCTTATCAAAACGCCTTCTTCTTCCAATATTTTCTCACGTATGCTTCAGATCTCTCCTTCACCCGACAAATTCCCAACCATTTCTTCACTTAATTCCTCTTCTAATTTCCTAATTCCCAATCATTCTCTTAACTCTCCCACCACTCCACATTCTGATCACCTTCATCATTTTCTTCATCATAATGATAATAATCCCTCCCCCTCCGCCCTTCACATCTCTTCTCCTCGCAATCCACCCGGTATCAAGCGAAGGAAGAGCCAAGCAAGGAAAGTGGTTTGTGTTCCAGCTCCAGTGGCTGCTAGTAGTAGACCAAATGGGGAAGTTATTCCTTCTGATCTGTGGGCTTGGAGGAAATATGGTCAGAAACCCATTAAAGGCTCTCCATATCCTAGGGGGTACTATAGATGCAGCAGCTCAAAGGGATGCTCAGCAAGAAAACAAGTGGAGAGAAGTAGAACAGATCCAAACATGCTGGTGATTACTTACACATCTGAGCATAACCATCCATGGCCAACTCAAAGAAATGCTCTTGCTGGTTCTTCAAGGTCCCAACAATCTAAAAACAACAACATTACTACTACTACTTCTTCAACTTCAACAACAACACCAACACCCAATTCTTCAAAACTCTCTCAAGATCATCATCACAAAAATAAGGAAGAAAAAGAAGAGCATCAAGATCAAAACAATGGAACATTATTATCAGCTGCAGCAACAACAACATCAAATAACAATAATAATGTTAAGGAAGAGGAAACTGAGAACCATCATCATCAATCGATGATGAGTGAAGGGTTTGATGATGATCATGATTTCTTTGCAGATTTGGAAGAATTACAAACAGACCCTTTAACTCTGTTGTTCACTACACAACAACCCCTTAAATTAGACCAAATCAAAGAATCAGCCACCACCACCCCCACTACTACTACAGGTTGCTTACACGACGTCGTTCCATTCAATAATCTATTTGATTGGCCACCACCTCCTCTAAACAACAATTCAACTCCATTTCATGAACAACCACCACCTACTACTCCTACCAACGGAGGTTTTTATTAA 1458 39.3 MLLLFEMENYEEGDLTDIVRGGSSRSRSTTRSSTSHCKTELGDQDEDQDSPFYSSSQDNNYNPQWSSSQFSSQLLLLQDHHHHHHHHQYSFGDPFCSTVAASLDLHQELDNTNNNTFFNGITTTTTTSTQDELIKTPSSSNIFSRMLQISPSPDKFPTISSLNSSSNFLIPNHSLNSPTTPHSDHLHHFLHHNDNNPSPSALHISSPRNPPGIKRRKSQARKVVCVPAPVAASSRPNGEVIPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSQQSKNNNITTTTSSTSTTTPTPNSSKLSQDHHHKNKEEKEEHQDQNNGTLLSAAATTTSNNNNNVKEEETENHHHQSMMSEGFDDDHDFFADLEELQTDPLTLLFTTQQPLKLDQIKESATTTPTTTTGCLHDVVPFNNLFDWPPPPLNNNSTPFHEQPPPTTPTNGGFY 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36697054 36700138 - CmPI595203_01g024840.1 Cmu01g2484 407990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2484 485 MobiDBLite consensus disorder prediction 259 400 - -
Cmu01g2484 485 MobiDBLite consensus disorder prediction 361 380 - -
Cmu01g2484 485 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 13 414 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Cmu01g2484 485 MobiDBLite consensus disorder prediction 381 400 - -
Cmu01g2484 485 FunFam probable WRKY transcription factor 14 216 296 - -
Cmu01g2484 485 Pfam WRKY DNA -binding domain 244 301 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g2484 485 Gene3D WRKY domain 216 296 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g2484 485 SMART WRKY_cls 242 302 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g2484 485 MobiDBLite consensus disorder prediction 21 37 - -
Cmu01g2484 485 MobiDBLite consensus disorder prediction 16 59 - -
Cmu01g2484 485 MobiDBLite consensus disorder prediction 286 341 - -
Cmu01g2484 485 ProSiteProfiles WRKY domain profile. 237 303 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g2484 485 SUPERFAMILY WRKY DNA-binding domain 241 303 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu01g2484 485 MobiDBLite consensus disorder prediction 342 360 - -
Cmu01g2484 485 MobiDBLite consensus disorder prediction 179 220 - -
Cmu01g2484 485 MobiDBLite consensus disorder prediction 466 485 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0090 Cmu-Chr1:736584 Cmu01g2484 Cmu-Chr1:36697054 2.20E-32 dispersed
Cmu01g2484 Cmu-Chr1:36697054 Cmu03g1450 Cmu-Chr3:10198678 2.10E-52 dispersed
Cmu01g2484 Cmu-Chr1:36697054 Cmu05g0143 Cmu-Chr5:1251759 1.40E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5641 PF03106 WRKY 2.80E-25 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2484 - - - 0.0