Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu01g2484 | ATGTTGTTGTTGTTTGAGATGGAGAATTATGAAGAAGGTGATTTGACTGATATTGTGAGAGGAGGAAGCTCAAGATCAAGATCAACAACAAGAAGCTCCACTTCTCATTGCAAAACGGAATTGGGTGATCAAGATGAAGATCAAGATTCTCCCTTTTATTCTTCATCACAAGATAACAATTACAATCCTCAGTGGAGTAGCTCCCAATTTTCATCACAACTACTACTACTACAAGATCATCATCATCATCATCATCATCATCAATACAGTTTTGGGGATCCATTTTGTAGTACTGTTGCTGCTTCACTTGATCTTCATCAAGAGCTGGATAATACTAATAATAATACTTTTTTCAATGGAATTACTACTACTACTACTACTTCTACTCAAGATGAGCTTATCAAAACGCCTTCTTCTTCCAATATTTTCTCACGTATGCTTCAGATCTCTCCTTCACCCGACAAATTCCCAACCATTTCTTCACTTAATTCCTCTTCTAATTTCCTAATTCCCAATCATTCTCTTAACTCTCCCACCACTCCACATTCTGATCACCTTCATCATTTTCTTCATCATAATGATAATAATCCCTCCCCCTCCGCCCTTCACATCTCTTCTCCTCGCAATCCACCCGGTATCAAGCGAAGGAAGAGCCAAGCAAGGAAAGTGGTTTGTGTTCCAGCTCCAGTGGCTGCTAGTAGTAGACCAAATGGGGAAGTTATTCCTTCTGATCTGTGGGCTTGGAGGAAATATGGTCAGAAACCCATTAAAGGCTCTCCATATCCTAGGGGGTACTATAGATGCAGCAGCTCAAAGGGATGCTCAGCAAGAAAACAAGTGGAGAGAAGTAGAACAGATCCAAACATGCTGGTGATTACTTACACATCTGAGCATAACCATCCATGGCCAACTCAAAGAAATGCTCTTGCTGGTTCTTCAAGGTCCCAACAATCTAAAAACAACAACATTACTACTACTACTTCTTCAACTTCAACAACAACACCAACACCCAATTCTTCAAAACTCTCTCAAGATCATCATCACAAAAATAAGGAAGAAAAAGAAGAGCATCAAGATCAAAACAATGGAACATTATTATCAGCTGCAGCAACAACAACATCAAATAACAATAATAATGTTAAGGAAGAGGAAACTGAGAACCATCATCATCAATCGATGATGAGTGAAGGGTTTGATGATGATCATGATTTCTTTGCAGATTTGGAAGAATTACAAACAGACCCTTTAACTCTGTTGTTCACTACACAACAACCCCTTAAATTAGACCAAATCAAAGAATCAGCCACCACCACCCCCACTACTACTACAGGTTGCTTACACGACGTCGTTCCATTCAATAATCTATTTGATTGGCCACCACCTCCTCTAAACAACAATTCAACTCCATTTCATGAACAACCACCACCTACTACTCCTACCAACGGAGGTTTTTATTAA | 1458 | 39.3 | MLLLFEMENYEEGDLTDIVRGGSSRSRSTTRSSTSHCKTELGDQDEDQDSPFYSSSQDNNYNPQWSSSQFSSQLLLLQDHHHHHHHHQYSFGDPFCSTVAASLDLHQELDNTNNNTFFNGITTTTTTSTQDELIKTPSSSNIFSRMLQISPSPDKFPTISSLNSSSNFLIPNHSLNSPTTPHSDHLHHFLHHNDNNPSPSALHISSPRNPPGIKRRKSQARKVVCVPAPVAASSRPNGEVIPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSQQSKNNNITTTTSSTSTTTPTPNSSKLSQDHHHKNKEEKEEHQDQNNGTLLSAAATTTSNNNNNVKEEETENHHHQSMMSEGFDDDHDFFADLEELQTDPLTLLFTTQQPLKLDQIKESATTTPTTTTGCLHDVVPFNNLFDWPPPPLNNNSTPFHEQPPPTTPTNGGFY | 485 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 36697054 | 36700138 | - | CmPI595203_01g024840.1 | Cmu01g2484 | 407990 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu01g2484 | 485 | MobiDBLite | consensus disorder prediction | 259 | 400 | - | - | |
Cmu01g2484 | 485 | MobiDBLite | consensus disorder prediction | 361 | 380 | - | - | |
Cmu01g2484 | 485 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 13 | 414 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER) | |
Cmu01g2484 | 485 | MobiDBLite | consensus disorder prediction | 381 | 400 | - | - | |
Cmu01g2484 | 485 | FunFam | probable WRKY transcription factor 14 | 216 | 296 | - | - | |
Cmu01g2484 | 485 | Pfam | WRKY DNA -binding domain | 244 | 301 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu01g2484 | 485 | Gene3D | WRKY domain | 216 | 296 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu01g2484 | 485 | SMART | WRKY_cls | 242 | 302 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu01g2484 | 485 | MobiDBLite | consensus disorder prediction | 21 | 37 | - | - | |
Cmu01g2484 | 485 | MobiDBLite | consensus disorder prediction | 16 | 59 | - | - | |
Cmu01g2484 | 485 | MobiDBLite | consensus disorder prediction | 286 | 341 | - | - | |
Cmu01g2484 | 485 | ProSiteProfiles | WRKY domain profile. | 237 | 303 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu01g2484 | 485 | SUPERFAMILY | WRKY DNA-binding domain | 241 | 303 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu01g2484 | 485 | MobiDBLite | consensus disorder prediction | 342 | 360 | - | - | |
Cmu01g2484 | 485 | MobiDBLite | consensus disorder prediction | 179 | 220 | - | - | |
Cmu01g2484 | 485 | MobiDBLite | consensus disorder prediction | 466 | 485 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g0090 | Cmu-Chr1:736584 | Cmu01g2484 | Cmu-Chr1:36697054 | 2.20E-32 | dispersed | |
Cmu01g2484 | Cmu-Chr1:36697054 | Cmu03g1450 | Cmu-Chr3:10198678 | 2.10E-52 | dispersed | |
Cmu01g2484 | Cmu-Chr1:36697054 | Cmu05g0143 | Cmu-Chr5:1251759 | 1.40E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5641 | PF03106 | WRKY | 2.80E-25 | CL0274 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu01g2484 | - | - | - | 0.0 |