Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2485 ATGGAACGCGGTTTCAAAACGGGAAAGGAAAAGAAGTTTCCGAAAGTGGACTTAAGCCAGCAGACAACCAACTTTGATGTCAACGTCTCTGTGAGTTGCACCAAAAGATCAACTACTGCCAACCAATACACCGACGAAAACTACTTCCCGAACAGACACCCGGCTTCAGCTTCCGATCGTGAACACTGCTCTTTTGTTCGTCTTCTTCACCCAGGAGGAGGTGATATAGGGACGGCTTCGAATTCTCAATCTATTTCATGTGAAATGAAACATTTGTATTCTTTTGTATTGCTCAGTTTCGTCATTGGCAGAATTTCATCTCATTTTGCAAGGAGTTGGTTTCAGAAGTTCCAAAATAGAGTAAAGAAGGAAACTGTAAGTGACAATGAGGTTCAAGATGTACCCTCAAGTGCAACAAAGCAGAAAGTTGAGGTTGCTAAGCAATATATCGAAAACCATTACAAATCTCAAATGAAGTCATTGCAAGATAGGAAGGAGAGACGTTGGGTGTTGGAGAGGAGGCTTGCTGATGCTGATGTTTCTGAGGAAGACCAAATAAACGTTCTTAAATATTTAGAACAGAAGGAGACAGAATACATGCGCCTTCGTAGACATAAAATGGGCGTTGATGACTTTGAACTTTTGACAATTATTGGAAGGGGTGCATTTGGGGAGGTTAGACTTTGTAGAGAAAAAGCCACAGGTCACGTGTATGCAATGAAGAAGCTTAAGAAATCTGAGATGCTTCGCAGGGGGCAGGTGGAACATGTTAAAGCTGAAAGAAATCTTTTAGCAGAGGTTGACAGTGCCTACATTGTGAAGTTATACTGCTCCTTTCAGGATGATGATTTTTTGTATCTTATAATGCAATATCTTCCTGGAGGTGATATGATGACCCTGTTAATGCGCAAGGATATTTTGACGGAGGATGAGGCCAGATTTTATGTTGGGGAAACAGTCCTTGCTATAGAGTCCATCCACAAGCATAATTACATTCACAGAGACATCAAGCCTGATAATTTACTGCTTGATCGTTATGGCCACATTAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAGTCTAGTAGTTTCCCTAATCTCACTGAGGAAGAAAAAGTAGTGGGGAAGAATGTCAGATCTTCCACCGAAAATGATAGTCAAATTAGTGCATCGAAACGGACACAACAAGAACAATTGTTACATTGGCAAAAGAACAGACGAACATTGGCTTATTCAGCTGTTGGAACGCCGGACTATATTGCCCCAGAAGTTTTATTGAGGAAAGGATATGGAATGGAGTGCGACTGGTGGTCCCTTGGTGCAATTATGTACGAAATGCTTGTGGGATTCCCACCTTTCTATTCTGATGATCCAATGTCTACATGTAGAAAGATTATTAACTGGAGAACTCATTTGAGATTCCCAACAGAAGCAAAATTGTCCATCGAGGCCAAAGATCTTATTTGCAAACTTCTATGCAATGTTGAGCAAAGGATTGGAACCAAAGGAGCTAAAGAAATTAAGGCGCATCCATGGTTTAAAGGTACACAATGGGATAAATTATATCAAATGGAAGCTGTTATCATTCCAGAGATTCAGGATGAGTTAGACACTCGAAATTTTGAGAAGTATGAAGAGCTGGGTGTGCCAGGTCAAACTCCATCAAAGTCGGGCCCTTTGAGAAAGAAGCTTTCACCCAAGGATGTGAACTTTGTTGGTTATACGTACAAGAATTTCGAAATTGTCAACGAACACCACTTGTCAGGCATTACTGAGATGAGGAAAAAGCCTATCAAGACCAAGAGACCATCTGTTACGACTCTATTTGGTACATTCACCGTTCTAAAATTTCTGACTAATGCAAGTTGCTGGTTTCCATTACATATTCTTACCTTCTGGCCTCTCTGTTTGGCTCTCTCTTTCCTTTCCTTAGCCACAGCAGATTCTTCGGAGCAGACTGTTCAAAGAAGTTATCCTAATCATTTGCCAACCCATCCCGAAGTCTCAGAAAGCCCCGATCCATCACCTCGTTCAACTGGATCACTGCAACAGCCGAAACGATTCTGCAATCTTTGTTCACAATCACAGATTCTCACCCGGCTAGTTAGCCTTCTTGTGGGTTAG 2127 41.51 MERGFKTGKEKKFPKVDLSQQTTNFDVNVSVSCTKRSTTANQYTDENYFPNRHPASASDREHCSFVRLLHPGGGDIGTASNSQSISCEMKHLYSFVLLSFVIGRISSHFARSWFQKFQNRVKKETVSDNEVQDVPSSATKQKVEVAKQYIENHYKSQMKSLQDRKERRWVLERRLADADVSEEDQINVLKYLEQKETEYMRLRRHKMGVDDFELLTIIGRGAFGEVRLCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYCSFQDDDFLYLIMQYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHIKLSDFGLCKPLESSSFPNLTEEEKVVGKNVRSSTENDSQISASKRTQQEQLLHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGMECDWWSLGAIMYEMLVGFPPFYSDDPMSTCRKIINWRTHLRFPTEAKLSIEAKDLICKLLCNVEQRIGTKGAKEIKAHPWFKGTQWDKLYQMEAVIIPEIQDELDTRNFEKYEELGVPGQTPSKSGPLRKKLSPKDVNFVGYTYKNFEIVNEHHLSGITEMRKKPIKTKRPSVTTLFGTFTVLKFLTNASCWFPLHILTFWPLCLALSFLSLATADSSEQTVQRSYPNHLPTHPEVSESPDPSPRSTGSLQQPKRFCNLCSQSQILTRLVSLLVG 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36712838 36721398 - CmPI595203_01g024850.1 Cmu01g2485 407991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2485 708 Gene3D Phosphorylase Kinase; domain 1 184 295 - -
Cmu01g2485 708 ProSiteProfiles AGC-kinase C-terminal domain profile. 515 587 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2485 708 FunFam Non-specific serine/threonine protein kinase 183 295 - -
Cmu01g2485 708 Pfam Protein kinase C terminal domain 533 577 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2485 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 331 343 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g2485 708 FunFam Non-specific serine/threonine protein kinase 296 363 - -
Cmu01g2485 708 FunFam Non-specific serine/threonine protein kinase 413 532 - -
Cmu01g2485 708 CDD STKc_NDR_like 210 578 - -
Cmu01g2485 708 Pfam Protein kinase domain 213 365 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2485 708 Pfam Protein kinase domain 411 514 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2485 708 SMART serkin_6 212 514 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2485 708 SMART pkinase_C_6 515 579 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2485 708 CDD MobB_NDR_LATS-like 146 207 - -
Cmu01g2485 708 SUPERFAMILY Protein kinase-like (PK-like) 193 561 IPR011009 -
Cmu01g2485 708 MobiDBLite consensus disorder prediction 655 684 - -
Cmu01g2485 708 PANTHER SERINE/THREONINE-PROTEIN KINASE 108 582 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cmu01g2485 708 Gene3D Transferase(Phosphotransferase) domain 1 405 534 - -
Cmu01g2485 708 Gene3D Transferase(Phosphotransferase) domain 1 296 364 - -
Cmu01g2485 708 ProSiteProfiles Protein kinase domain profile. 212 514 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g2485 708 ProSitePatterns Protein kinases ATP-binding region signature. 218 241 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2485 Cmu-Chr1:36712838 Cmu06g0697 Cmu-Chr6:8115155 4.20E-222 dispersed
Cmu01g2485 Cmu-Chr1:36712838 Cmu05g1848 Cmu-Chr5:28534477 5.50E-182 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75268 PF00069 Pkinase 4.40E-64 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2485 K08790 - csv:101208438 1045.42