Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g2502 ATGGCGCCGGGCCTCAGAGACCTCCAGCTCGCCCAGGTCGCCGCCGCAGACCGTCGCCCGCCAGATATTTCTGCGGCTGATGAAATTCCCGATGACCTTGAGGATGTGCGTTTGCTTGATTCCTATGAGAGGCAGGATGAGAATTTGGCCAAAATTGGGGATGGTATGAGGAGGGTTCAGGTCACAGTTTCTGGGATGACCTGCGCTGCTTGTTCTAATTCCGTGGAGGCTGCTCTGAGGGGCGTTAATGGCGTTTTGATGGCTTCTGTTGCATTGCTTCAGAACAGAGCTGACGTAGTTTTTGACCCCAACTTGATTAAGGAGGAAGACATCAAGGAAGCAATAGAAGATGCTGGATTTGAGGCTGAGATTATACCTGAAACCACTTCAGTTGGAAAGAAGCCGCATGGAACACTGGTGGGTCAATTTACCATAGGCGGTATGACATGTGCAGCATGTGTGAATTCGGTAGAAGGAATTTTAAAAGATCTTCCTGGTGTTAGAAGAGCAGTAGTTGCTTTAGCCACATCATTGGGAGAAGTTGAATATGATCCTACAATAACCAGTAAAGACGATATAGTTAACGCAATTGAGGATGCTGGATTTGAAGCTTCATTTGTACAGAGCAGCGAACAAGATAAAATTTTACTAGCAGTTGCAGGCATTGCTGGCGAGGTTGATGTACATTTTTTGGAAGTCATACTTAGCAACTTGAAAGGGGTGAAACGGTTTCTCTTTGACAGTACATCAGGAAAACTTGAAATTATTTTTGACCCAGAAGTTGTTGGTCCCAGATCCTTAGTGGATGAGATTGAGGGAAGAAGCAACAGAAAATTTAAACTGCATGTTACGAGCCCTTACACAAGGTTAACATCTAAAGATGTTGAAGAGGCTAATAACATGTTTCGGCTTTTTATCTCCAGTCTGTCTCTCAGTGTACTCATCTTTCTCCAACGAGTAATATGTCCTCATATTCCTTTAATCTACTCATTGCTACTCTGGCGCTGTGGGCCCTTCCTCATGGATGATTGGTTAAAGTGGGCATTAGTGACTGTTGTACAATTTATTATTGGAAAGCGCTTTTACATTGCAGCTGCTAGAGCTCTTCGAAATGGTTCAACAAACATGGATGTCTTGGTTGCTTTGGGTACCACGGCCTCTTACGTCTATTCTGTTTGTGCACTTCTCTATGGTGCAATAACTGGATTTTGGTCTCCTACTTATTTTGAAACAAGTGCTATGTTAATAACCTTTGTATTATTGGGAAAGTATTTGGAGTGTCTTGCCAAGGGGAAAACATCAGATGCCATCAAGAAGTTGGTAGAACTTGCTCCTGCAACTGCTTTATGGCTTATCCGAGATAAAGGTGGGAATTTGATAGAAGAAAGGGAAATCGATGCTCTGTTAATTCAACCTGGTGATGTGTTGAAGGTTCTTCCTGGTACAAAGATTCCAGCGGATGGTGTTGTTGTTTGGGGTTCAAGTTATGTTAATGAGAGTATGGTTACAGGAGAATCTATACCTGTTTTAAAGGAGGTTAACTCGCACGTTATTGGAGGTACAATTAATTTTCATGGAGCTCTTCACATTCAAGCAACAAAAGTAGGATCTGATGCAGTTTTGAACCAGATTATTAGTTTGGTTGAGACAGCTCAGATGTCTAAAGCTCCCATTCAGAAATTTGCTGACTTTGTGGCAAGCATATTTGTTCCAACCGTCGTAGCTATGGCATTGTGTACGTTATTTGGTTGGTACGTTGGAGGAATTCTTGGGGCTTATCCTGCTGAATGGCTCCCAGAAAATGGAAATTACTTTGTATTTTCCCTTATGTTTGCCATAGCAGTGGTAGTTATTGCATGTCCTTGTGCACTAGGCTTGGCCACACCAACTGCTGTCATGGTTGCTACTGGGGTTGGTGCGAGCAATGGTGTCTTGATTAAAGGAGGAGATGCTTTGGAGAGGGCCCAAAAGGTTAAGTACGTGATTTTTGATAAAACAGGCACACTAACCCAAGGGAAAGCAACCGTTACTACCGCCAAAGTATTCACTGAAATTTCTCGAGGAGATTTTCTTAAGTTGGTTGCTTCAGCAGAGGCTAGCAGTGAACACCCATTAGGAAAAGCTATAGTTGAGTATGCACGTCATTTCCATTTCTTTGATGAGCCTTCTGCGACCAAAAATGTGGAAAATCAAAGTAAAGAATCTTCTGGATGGCTTTATGATGCCACAGATTTCTCTGCATTGCCAGGCCAAGGCATCCAGTGCATTATTGAGGGAAAAAGGATTCTGGTTGGCAACAGGAAGTTGATGAATGAAAGTGGAATCTTCATAGCACCTCATGTTGATAATTTCGTTATAGAGCTTGAAGAAAGTGCAAAGACAGGCATTCTTGTTGCATGTGATGACAACTTAATTGGAGTTGTCGGAATAGCAGATCCACTGAAGCGAGAAGCTGCAGTTGTTGTAGAGGGTCTTGTAAAAATGGGAGTTTCTCCAGTGATGGTTACAGGGGATAATTGGAGAACGGCTCGAGCTGTCGCCAAAGAGCTTGGTATACAAGATGTGAGAGCAGAAGTAATGCCAGCAGGAAAGGCCGAAGTCATTCAAAACTTCCAAAAGGATGGAAGCACAGTTGCAATGGTAGGTGATGGTATCAATGACTCGCCTGCTCTAGCTGCTTCTGATATTGGAATTGCAATCGGTGCGGGAACTGATATTGCCATTGAGGCAGCCGACTTTGTCCTGATGAGAAATAATTTAGAAGATGTAATTACAGCCATTGATCTCTCAAGGAAGACTTTCAATCGGATTCGATTAAATTACGTGTTTGCAATGGCCTACAATGTAATAGCTATTCCTATCGCTGCTGGAGTTTTCTTTCCTTCTTTGGGGGTTAAATTGCCTCCATGGGCAGCTGGTGCATGCATGGCTTTATCGTCCGTAAGTGTCGTTTGCTCTTCTTTACTTCTTAGGAGATACAAAAGACCAAGACTTACGACAATACTCGAAATAACTGTAGAATAG 3024 42.96 MAPGLRDLQLAQVAAADRRPPDISAADEIPDDLEDVRLLDSYERQDENLAKIGDGMRRVQVTVSGMTCAACSNSVEAALRGVNGVLMASVALLQNRADVVFDPNLIKEEDIKEAIEDAGFEAEIIPETTSVGKKPHGTLVGQFTIGGMTCAACVNSVEGILKDLPGVRRAVVALATSLGEVEYDPTITSKDDIVNAIEDAGFEASFVQSSEQDKILLAVAGIAGEVDVHFLEVILSNLKGVKRFLFDSTSGKLEIIFDPEVVGPRSLVDEIEGRSNRKFKLHVTSPYTRLTSKDVEEANNMFRLFISSLSLSVLIFLQRVICPHIPLIYSLLLWRCGPFLMDDWLKWALVTVVQFIIGKRFYIAAARALRNGSTNMDVLVALGTTASYVYSVCALLYGAITGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALWLIRDKGGNLIEEREIDALLIQPGDVLKVLPGTKIPADGVVVWGSSYVNESMVTGESIPVLKEVNSHVIGGTINFHGALHIQATKVGSDAVLNQIISLVETAQMSKAPIQKFADFVASIFVPTVVAMALCTLFGWYVGGILGAYPAEWLPENGNYFVFSLMFAIAVVVIACPCALGLATPTAVMVATGVGASNGVLIKGGDALERAQKVKYVIFDKTGTLTQGKATVTTAKVFTEISRGDFLKLVASAEASSEHPLGKAIVEYARHFHFFDEPSATKNVENQSKESSGWLYDATDFSALPGQGIQCIIEGKRILVGNRKLMNESGIFIAPHVDNFVIELEESAKTGILVACDDNLIGVVGIADPLKREAAVVVEGLVKMGVSPVMVTGDNWRTARAVAKELGIQDVRAEVMPAGKAEVIQNFQKDGSTVAMVGDGINDSPALAASDIGIAIGAGTDIAIEAADFVLMRNNLEDVITAIDLSRKTFNRIRLNYVFAMAYNVIAIPIAAGVFFPSLGVKLPPWAAGACMALSSVSVVCSSLLLRRYKRPRLTTILEITVE 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36906474 36917178 - CmPI595203_01g025020.1 Cmu01g2502 408008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g2502 1007 ProSitePatterns E1-E2 ATPases phosphorylation site. 664 670 IPR018303 -
Cmu01g2502 1007 SUPERFAMILY Calcium ATPase, transduction domain A 462 548 IPR008250 -
Cmu01g2502 1007 Gene3D - 56 128 - -
Cmu01g2502 1007 FunFam Copper-exporting P-type ATPase A 55 125 - -
Cmu01g2502 1007 NCBIfam HAD-IC family P-type ATPase 751 962 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu01g2502 1007 NCBIfam HAD-IC family P-type ATPase 415 691 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu01g2502 1007 SUPERFAMILY HMA, heavy metal-associated domain 53 126 IPR036163 GO:0046872(InterPro)
Cmu01g2502 1007 Gene3D - 629 938 IPR023214 -
Cmu01g2502 1007 SUPERFAMILY HMA, heavy metal-associated domain 138 210 IPR036163 GO:0046872(InterPro)
Cmu01g2502 1007 Pfam haloacid dehalogenase-like hydrolase 658 894 - -
Cmu01g2502 1007 NCBIfam copper ion binding protein 59 122 IPR006122 GO:0005507(InterPro)
Cmu01g2502 1007 NCBIfam copper ion binding protein 142 204 IPR006122 GO:0005507(InterPro)
Cmu01g2502 1007 NCBIfam heavy metal translocating P-type ATPase 376 990 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cmu01g2502 1007 SFLD C1.7: P-type atpase like 644 933 - -
Cmu01g2502 1007 PRINTS P-type cation-transporting ATPase superfamily signature 806 817 - -
Cmu01g2502 1007 PRINTS P-type cation-transporting ATPase superfamily signature 904 916 - -
Cmu01g2502 1007 PRINTS P-type cation-transporting ATPase superfamily signature 662 676 - -
Cmu01g2502 1007 PRINTS P-type cation-transporting ATPase superfamily signature 828 838 - -
Cmu01g2502 1007 PRINTS P-type cation-transporting ATPase superfamily signature 498 512 - -
Cmu01g2502 1007 PRINTS P-type cation-transporting ATPase superfamily signature 881 900 - -
Cmu01g2502 1007 FunFam Copper-exporting P-type ATPase 761 812 - -
Cmu01g2502 1007 ProSiteProfiles Heavy-metal-associated domain profile. 139 205 IPR006121 GO:0046872(InterPro)
Cmu01g2502 1007 FunFam Copper-transporting ATPase 1, putative 430 552 - -
Cmu01g2502 1007 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 46 1004 - -
Cmu01g2502 1007 Gene3D - 141 206 - -
Cmu01g2502 1007 ProSitePatterns Heavy-metal-associated domain. 63 93 IPR017969 GO:0046872(InterPro)
Cmu01g2502 1007 Gene3D - 430 552 - -
Cmu01g2502 1007 ProSitePatterns Heavy-metal-associated domain. 145 174 IPR017969 GO:0046872(InterPro)
Cmu01g2502 1007 SUPERFAMILY Calcium ATPase, transmembrane domain M 399 969 IPR023298 -
Cmu01g2502 1007 CDD HMA 142 205 IPR006121 GO:0046872(InterPro)
Cmu01g2502 1007 SFLD p-type atpase 644 933 IPR044492 -
Cmu01g2502 1007 FunFam Copper-exporting P-type ATPase A 138 207 - -
Cmu01g2502 1007 CDD P-type_ATPase_Cu-like 303 977 - -
Cmu01g2502 1007 FunFam Probable copper-transporting ATPase HMA5 788 938 - -
Cmu01g2502 1007 PRINTS H+-transporting ATPase (proton pump) signature 912 937 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu01g2502 1007 PRINTS H+-transporting ATPase (proton pump) signature 881 897 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu01g2502 1007 PRINTS H+-transporting ATPase (proton pump) signature 853 869 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu01g2502 1007 Gene3D - 669 761 IPR023299 GO:0000166(InterPro)
Cmu01g2502 1007 Gene3D - 762 812 IPR023299 GO:0000166(InterPro)
Cmu01g2502 1007 CDD HMA 60 123 IPR006121 GO:0046872(InterPro)
Cmu01g2502 1007 Pfam E1-E2 ATPase 446 640 - -
Cmu01g2502 1007 FunFam Copper-transporting ATPase RAN1 669 760 - -
Cmu01g2502 1007 Pfam Heavy-metal-associated domain 61 121 IPR006121 GO:0046872(InterPro)
Cmu01g2502 1007 Pfam Heavy-metal-associated domain 143 203 IPR006121 GO:0046872(InterPro)
Cmu01g2502 1007 ProSiteProfiles Heavy-metal-associated domain profile. 57 123 IPR006121 GO:0046872(InterPro)
Cmu01g2502 1007 SUPERFAMILY HAD-like 661 987 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2502 Cmu-Chr1:36906474 Cmu04g0503 Cmu-Chr4:17768822 2.50E-236 dispersed
Cmu01g2502 Cmu-Chr1:36906474 Cmu02g1231 Cmu-Chr2:25202759 2.80E-163 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g2502 K17686 - csv:101205642 1840.47