Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0002 ATGGCGATGTTTTCCGTGAAAGCGCGGCTATTTCTAGCTTTCTTCTTTGTTATTGGAATTCATAACATCTTCTCCTACACAGATCCGAACGATGTTGAAATCCTGTTATCGTTGAAAGAGGTATGGAAAAATACGCCACCGACATGGAGGACATCAAGCGATCCATGTGGAGATCTTTGGGAAGGAGTCAGTTGCAACGATTCTAGAGTCACTGAATTAAAATTACCCTATATGGGCCTTGAAGGCCATCTTAGTGGTGACATTGGAGGCCTTACTGAACTAATAACATTGGACCTGTCATTTAATAGATATCTCACTGGTCCACTCTCTCCTAGGTTGGGGGATTTGCGAAATTTGAAGACCTTAATTCTAGCTGCATGTGGCTTCAGTGGTAATATTCCCCAAGAGTTGGGAAACCTTACTCAGTTGATGTCCTTGGCTTTGAATTCAAACCAACTCATTGGTTCTATACCACGTAGTCTTGGAAAGCTCTCCAAACTGGTTTTGCTAGACTTGATGGAGAATCAGTTGAATGGATCTCTCCCTGTCTCAACTTTTGATTCACCAGGTCTGGACCTTCTTCTCCAAGCAAAGCACTTTCACTTGAGCAAGAACAGGCTGTCAGGCTCTATACCCCCTAAGCTCTTTAGCGCTGATATGAAATTAATACACATAGTATTTGACCAGAATCAGTTTTCTGGGAGTATTCCACAAACCTTGGGACTTGTTAACACCCTTGAACTTCTCCGACTTGATAGGAATTCTCTAACAGGAATTGTCCCATCAGATCTTACCAACTTAAAACAAATCCTTCAGTTGAATTTAGCACACAATAATCTGACAGGGCCGTTGCCAAATTTAACTCAAATGACTTCACTATGTGTTGTGGACCTTAGTTACAACTCATTTGATGCATCAACAGCCCCAGATTGGTTCTCAAGCTTACCATCTCTCACCAGTTTGATCGTTGAATATGGGGAACTGGAAGGACCTGTCCCAGAAACAATCTTTAGCTTACCACAGATACAACAAATGCTTGAAGGAAATCCTGCGTGCAACAATAATGTTGATCCCCTCGTGAAACAAAATCATTATTGCCTACCTAATTCACAACCAGCTGATCTAAAGCCTAATTTTGGGAGTCCAGTACTCAACTGTGAAACTAGATTGTGCTCTAATGGCGAGAAGAATAACCCTCAAAACTGTGAATGTCAATATCCCTTTGTAGGGTCTTTCTACTTCAGAGGGCCCTCCATCAGAGACTTGTCTAATGACACCTTGTTTCAGTTACTGAAATACAGCCTCTCCAACAAACTAAATCTTTCTATTGCTTCAGTTGTTATTCAAAAGCCTGTGTTTGAAAGTGATGATTACCTTCACATTCAACTTCAACTTTTTCCACCCTTTGGAAAATATTTCAATCGTTCAGAAATTTTGAGGATTGCGTCTGCGTTGAGTTATCAAACTTTCCTTCTTTCCCCTGATTTAGGATCATTTTATTTCATTCCACTTGATCAGTACAATTTTTTAGCTCCAGATGTTGGAAATTTTAGTAGCATTAGCAACAGGTGGCTTATTGGGATTGCAATTGGTTGTGGCTTACTGCTCCTAACCCTATTTGGAGTTGGAGTATATGCAATTAAGCAGAAGAAAAGAGTATCAAAAGCGATTTCATTGAGCAAGCCATTTGCTTCCTGGTCATCTATTGAACAAATAACTGGAGAAGCACCACAATTAAAGGGAGCCATATATTTTTCTTACGATGAGCTTAGGAAGTTGACAAATAATTTCTCCATAAGTAATGAGATTGGAGCTGGAGGATATGGGAAGGTCTATAGAGGAATTACTGGGTATGGACAAGTTTTCGCAATCAAAAGAGCTAGGCAAGGCTCGAAACAGGGTGCACATGAGTTTAAGACTGAGATTGAATTGCTTTCACGAGTTCATCATAAGAATCTCGTTGGCCTTGTAGGATTTTGTTGTGAACAGGGAGAACAGATGCTTGTTTATGAATTCATGCCTTATGGATCGCTTCGTGACATCCTTGGGAGTTGTGTCCATCTTGATTGGAAGAGAAGACTTGAGATAGCACTTGACTCTGCAAGAGGACTAGCTTACCTTCACGAGTTTGCAAATCCTCCAATAATCCATAGAGATATTAAGTCCTCCAATATTCTTTTAGATGAATATTTTAATGCGAAGGTTGCAGATTTTGGCCTGTCCAAGCTTGTATTTGACCATGAAAAGGGACATATTTCTACTGGAGTTAAAGGCACGTGGATGAAGACTTACAAAGATAGGGTCACAAGGAAGGCAAAGGCCAAAGCTTGCATATATGCAGCAGTGGCTCCTGTTGTATTTAACAGAATCATGGCCTTGAAGTTAACAAAGGAGATCTGTGAATTCCTCAAAGGGTATGGTGAATATCTAGAAGTGACGGGGAAGGACATGGTGTCAATAGAGAGTCGTGCATGA 2475 40.61 MAMFSVKARLFLAFFFVIGIHNIFSYTDPNDVEILLSLKEVWKNTPPTWRTSSDPCGDLWEGVSCNDSRVTELKLPYMGLEGHLSGDIGGLTELITLDLSFNRYLTGPLSPRLGDLRNLKTLILAACGFSGNIPQELGNLTQLMSLALNSNQLIGSIPRSLGKLSKLVLLDLMENQLNGSLPVSTFDSPGLDLLLQAKHFHLSKNRLSGSIPPKLFSADMKLIHIVFDQNQFSGSIPQTLGLVNTLELLRLDRNSLTGIVPSDLTNLKQILQLNLAHNNLTGPLPNLTQMTSLCVVDLSYNSFDASTAPDWFSSLPSLTSLIVEYGELEGPVPETIFSLPQIQQMLEGNPACNNNVDPLVKQNHYCLPNSQPADLKPNFGSPVLNCETRLCSNGEKNNPQNCECQYPFVGSFYFRGPSIRDLSNDTLFQLLKYSLSNKLNLSIASVVIQKPVFESDDYLHIQLQLFPPFGKYFNRSEILRIASALSYQTFLLSPDLGSFYFIPLDQYNFLAPDVGNFSSISNRWLIGIAIGCGLLLLTLFGVGVYAIKQKKRVSKAISLSKPFASWSSIEQITGEAPQLKGAIYFSYDELRKLTNNFSISNEIGAGGYGKVYRGITGYGQVFAIKRARQGSKQGAHEFKTEIELLSRVHHKNLVGLVGFCCEQGEQMLVYEFMPYGSLRDILGSCVHLDWKRRLEIALDSARGLAYLHEFANPPIIHRDIKSSNILLDEYFNAKVADFGLSKLVFDHEKGHISTGVKGTWMKTYKDRVTRKAKAKACIYAAVAPVVFNRIMALKLTKEICEFLKGYGEYLEVTGKDMVSIESRA 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 74339 90097 - CmPI595203_02g000020.1 Cmu02g0002 408051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0002 824 Pfam Protein tyrosine and serine/threonine kinase 599 751 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g0002 824 FunFam Leucine-rich repeat family protein 30 186 - -
Cmu02g0002 824 Gene3D Ribonuclease Inhibitor 29 188 IPR032675 -
Cmu02g0002 824 Gene3D Ribonuclease Inhibitor 189 364 IPR032675 -
Cmu02g0002 824 FunFam Os07g0541700 protein 680 759 - -
Cmu02g0002 824 PANTHER RECEPTOR-LIKE PROTEIN 55 42 761 - -
Cmu02g0002 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 715 727 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g0002 824 ProSiteProfiles Protein kinase domain profile. 597 824 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0002 824 SUPERFAMILY Protein kinase-like (PK-like) 579 760 IPR011009 -
Cmu02g0002 824 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515(InterPro)
Cmu02g0002 824 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Cmu02g0002 824 FunFam receptor-like protein kinase FERONIA 564 672 - -
Cmu02g0002 824 Gene3D Phosphorylase Kinase; domain 1 563 672 - -
Cmu02g0002 824 SUPERFAMILY L domain-like 49 405 - -
Cmu02g0002 824 Gene3D Transferase(Phosphotransferase) domain 1 673 775 - -
Cmu02g0002 824 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Cmu02g0002 824 SMART serkin_6 597 803 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0002 824 ProSitePatterns Protein kinases ATP-binding region signature. 603 625 IPR017441 GO:0005524(InterPro)
Cmu02g0002 824 FunFam Leucine-rich repeat protein kinase family protein 187 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0002 Cmu-Chr2:74339 Cmu10g2084 Cmu-Chr10:26795691 7.30E-194 dispersed
Cmu04g1016 Cmu-Chr4:24745761 Cmu02g0002 Cmu-Chr2:74339 1.70E-13 dispersed
Cmu02g0002 Cmu-Chr2:74339 Cmu10g2988 Cmu-Chr10:36062105 3.70E-222 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75270 PF07714 PK_Tyr_Ser-Thr 5.60E-31 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0002 - - - 0.0