Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0011 ATGATCCATTCTTCTTTGCTTGCAGCTTTTGCAGCCTCAGAAGCCATGCCTCTTTCTAAAGGAGGTACTCCTATGTTTTCAATGCTTTATAGATGGAACCCCTTAAGACTGATCATTCAGGGGCTGCTACTGTTCTCATTGTTGAGGTCGAATCATGCATCAACGGATCCTGATGTGGAAGGAGAAGCTTTGGTTGACTTGTTAGGGGCACTGAATGATTCCAATCATCAGATTACTGATTGGAATTATCATCTTGTAAGCCCTTGCTTTAGTTGGTCGCATATTACCTGCCGAAATGGAAATGTCATATCCTTGAGCTTGGGTTCAGTAGGATTTTCAGGATCACTTTCTCCCTCAATTACCAAACTGAAGTATTTGGCTAGCCTGGATTTGCAGAAGAATAATATAGCTGGTGTTATACCAGATTATCTAGCTAACATGACCCACCTACAGAATTTGAATCTTGCTAATAATAACTTCAATGGCCCTATACCTGCAGCTTGGGATCGACTTGTCGGTCTAAAGCATCTGGATCTCTCAGATAACAACTTAACAGGAGAAGTTCCAGCGCAGTTCTTTTCAATTCCAATGTTCAACTTTTCAGGAACTGGTTTAAATTGTGGGTTTAGGTTGGATAAACCTTGTGTTTCGACATCTCCCCATCGAGCTTCTGCAAAGAATTCAAAGTTTGGGGTAGTGGCGAGTACTGCAAGTTGTGGGGGTTTCATACTTCTGTCAATTGGTGCCTTCTTTGCTTATAGATGCTTCTACGTGCATAAGCTTAAGGATCCTATGTTTGTTGATGTTGCTGGTGAAGATGAATGTAAACTTTGCTTTGGGCAAATCAGAAGATTTTCATTGCGGGAAATCCAACTTGCTACCGATAACTTTAACGAAGCAAACATCATTGGCCAAGGAGGCTTTGGAAAAGTATATAAAGGCATCCTCTCGGATGCCTCCAAGGTGGCTGTGAAACGGTTAACAGACTACAATAGTCCTGGCGGGGAGGCTGCATTCCTAAGAGAAGTTCAACTAATAAGCGTTGCGGTGCATAGAAATCTCCTCCGGTTGATTGGGTTCTGCACAACCACATCTGAGAGAATCCTCGTTTATCCATTCATGCAGAATCTTAGCGTGGCACATCGCCTGAGAGATTTAAAACCTGGAGAAAGAAGCTTGGACTGGGCCACGAGGAAACGAATTGCTTTCGGTGCAGCTCATGGTTTGGAGTATTTGCATGAGCACTGTAATCCTAAGATCATTCATCGCGATCTGAAGGCTGCGAATATCTTATTAGACGATGACTTTGAAGCTGTTCTTGGAGATTTCGGGCTGGCTAAGCTAGTTGATACTAAAGTCACTCATATTACCACTCAAGTGCGTGGTACGATGGGTCACATTGCCCCAGAATACCTGTCCACTGGAAAGTCGTCCGAAAAGACAGATGTTTTTGGATATGGTATCACCCTTCTTGAACTTGTCACTGGCCAGCGAGCAATAGATTTCTCCCGCCTCGAAGAGGAGGAAGATGTTCTTCTACTTGATCATATAAAGAAGTTGCAGAGGGAGAATAGGCTTGAAGATGTGGTGGACAAAAACTTAAGAAGCTACGATGAGAAAGAAGTCGAAAACATAGTTCAGGTGGCACTGCTTTGCACTCAAAGCTCACCCGAGGACCGACCCACAATGGCGGAAGTTGTGAATCTACTACATGGAGAAGGGCTGGCAGATAGGTGGGCAGAGTGGATGCAGCTTGAAGAGGTAAGAGATCAGGAAGTTTCCCTCTTGTGTCACCAATTTGTTTGGGGTGAAGAGTCAAGTCATGATCAAGAAGCCATACAGTTGTCTAAAGCCAGATAG 1860 43.82 MIHSSLLAAFAASEAMPLSKGGTPMFSMLYRWNPLRLIIQGLLLFSLLRSNHASTDPDVEGEALVDLLGALNDSNHQITDWNYHLVSPCFSWSHITCRNGNVISLSLGSVGFSGSLSPSITKLKYLASLDLQKNNIAGVIPDYLANMTHLQNLNLANNNFNGPIPAAWDRLVGLKHLDLSDNNLTGEVPAQFFSIPMFNFSGTGLNCGFRLDKPCVSTSPHRASAKNSKFGVVASTASCGGFILLSIGAFFAYRCFYVHKLKDPMFVDVAGEDECKLCFGQIRRFSLREIQLATDNFNEANIIGQGGFGKVYKGILSDASKVAVKRLTDYNSPGGEAAFLREVQLISVAVHRNLLRLIGFCTTTSERILVYPFMQNLSVAHRLRDLKPGERSLDWATRKRIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKVTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDKNLRSYDEKEVENIVQVALLCTQSSPEDRPTMAEVVNLLHGEGLADRWAEWMQLEEVRDQEVSLLCHQFVWGEESSHDQEAIQLSKAR 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 173787 179874 - CmPI595203_02g000110.1 Cmu02g0011 408060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0011 619 Gene3D Phosphorylase Kinase; domain 1 266 373 - -
Cmu02g0011 619 FunFam Somatic embryogenesis receptor-like kinase 1 374 590 - -
Cmu02g0011 619 Pfam Leucine rich repeat 126 184 IPR001611 GO:0005515(InterPro)
Cmu02g0011 619 Gene3D Ribonuclease Inhibitor 57 217 IPR032675 -
Cmu02g0011 619 Pfam Protein tyrosine and serine/threonine kinase 301 569 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g0011 619 SUPERFAMILY L domain-like 61 196 - -
Cmu02g0011 619 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524(InterPro)
Cmu02g0011 619 FunFam Somatic embryogenesis receptor kinase 1 266 373 - -
Cmu02g0011 619 SMART serkin_6 297 570 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0011 619 SUPERFAMILY Protein kinase-like (PK-like) 278 570 IPR011009 -
Cmu02g0011 619 Gene3D Transferase(Phosphotransferase) domain 1 374 590 - -
Cmu02g0011 619 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 47 618 - -
Cmu02g0011 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g0011 619 ProSiteProfiles Protein kinase domain profile. 297 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0011 619 FunFam Leucine-rich repeat receptor-like kinase 59 172 - -
Cmu02g0011 619 Pfam Leucine rich repeat N-terminal domain 60 97 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0011 Cmu-Chr2:173787 Cmu07g1698 Cmu-Chr7:32262047 1.00E-163 dispersed
Cmu02g0011 Cmu-Chr2:173787 Cmu07g1697 Cmu-Chr7:32242753 5.70E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75271 PF00069 Pkinase 4.20E-45 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0011 - - - 0.0