Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0026 ATGGGGAAAGGACCGTTTTCTTTCCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGCGGTTCATTCGTCACCGTCCTCGTCGCCACAGCCACCTCCGCAGATTAGCACCAGTTCTCCTCCCATTAACAATAATGGGAATGGCTTGGTTGGTGGTGGGGGTGGTGGGGTTGTGGGAAAAGTGAAGAAGAAGGCCGGAGGAGCTAGGCTGTGGATGCGTCTCGACAGGTGGGGGCAAGCGGAGCTTTTAGAGTGGGACAAGAATGCTATAATCCGACGTGCTGCAATTCCGGCTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAGCATACTCGCCAGCGAAAAGGCCATGGTTGTTCATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTATTACTTCACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTTGCTAAGACGGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAAGCTGCTGAAGGTGAGCAGTATGAGCTCCCGTTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTTGTGTGCATGTACTTGGATTCCAGTGTGGCAGACCTTGAGAGAGACGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACCCGTATTCTTGCACGTGTTCAGAAGGTGCGGGATGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTTGATACTTTGCCGGGAGGTGTGGCTTCCAACAGCACGACTGCTATCGTTCCTCATCTTCGTCTACTTAGTTCCACCAGGAGTGGCAGTGTGGTGACCAGCAACCTTTTGGATGATAATGACGTAGAGGACTTGGAGATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGATGACACCGAGGATTATGTTAATATTCAACTTGACAACCAAAGAAATGAACTTATTCAGTTTCAGTTAACCCTGACAATTGCTTCATTTGCCCATAGCTGTTGA 1170 46.67 MGKGPFSFRRSSSRRRPKKAVHSSPSSSPQPPPQISTSSPPINNNGNGLVGGGGGGVVGKVKKKAGGARLWMRLDRWGQAELLEWDKNAIIRRAAIPARDLRILGPVFSHSSSILASEKAMVVHLEFIKAIVTAEEVLLLHPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDTLPGGVASNSTTAIVPHLRLLSSTRSGSVVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAHSC 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 303931 308718 - CmPI595203_02g000260.1 Cmu02g0026 408075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0026 389 FunFam Magnesium transporter MRS2-1 59 142 - -
Cmu02g0026 389 Gene3D Magnesium transport protein CorA, transmembrane region 144 373 - -
Cmu02g0026 389 CDD Mrs2_Mfm1p-like 71 386 IPR039204 -
Cmu02g0026 389 MobiDBLite consensus disorder prediction 1 55 - -
Cmu02g0026 389 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 57 388 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cmu02g0026 389 Coils Coil 240 274 - -
Cmu02g0026 389 Gene3D - 59 141 - -
Cmu02g0026 389 Pfam Magnesium transporter MRS2-like 84 286 - -
Cmu02g0026 389 Pfam Magnesium transporter MRS2-like 323 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0026 K16075 - - csv:101203496 617.076
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0026 Cmu-Chr2:303931 Cmu05g1054 Cmu-Chr5:9822365 7.00E-179 dispersed
Cmu02g0026 Cmu-Chr2:303931 Cmu07g0122 Cmu-Chr7:1073170 5.20E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g1277 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla02g00024 Cam02g0026 Cec02g0026 Cco02g0023 Clacu02g0026 Cmu02g0026 Cre02g0369 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g2053 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Cmu08g0986 . 6 380 MRS2 Gene Family AT1G16010 52.1 2.8e-107 386.0
Cmu06g0647 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.3e-158 556.2
Cmu07g0122 . 788 1159 MRS2 Gene Family AT5G64560 69.2 6.2e-132 467.6
Cmu02g0734 . 14 495 MRS2 Gene Family AT3G19640 64.4 3.0e-155 545.4
Cmu05g1054 . 59 433 MRS2 Gene Family AT3G58970 69.6 6.3e-136 481.1
Cmu02g0026 . 59 386 MRS2 Gene Family AT3G58970 69.9 4.2e-116 415.2
Cmu08g0986 . 6 380 MRS2 Gene Family AT2G03620 68.1 5.5e-137 484.6
Cmu10g2053 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Cmu06g0647 . 1 327 MRS2 Gene Family AT5G09690 76.1 3.9e-127 451.4
Cmu07g0122 . 788 1121 MRS2 Gene Family AT5G09690 64.2 1.1e-108 390.2
Cmu10g2053 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.8e-78 288.1
Cmu06g0647 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.7e-89 326.2
Cmu07g0122 . 823 1081 MRS2 Gene Family AT5G09720 62.0 2.2e-76 282.7
Cmu10g2053 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.4e-201 696.8
Cmu08g0986 . 6 380 MRS2 Gene Family AT1G80900 54.0 5.3e-106 381.7
Cmu01g1362 . 16 424 MRS2 Gene Family AT5G22830 68.4 8.6e-144 507.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47