Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu02g0028 | ATGGCCACTAGGCTTATGTTTGAGAACTCATGTGAAATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCCTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTACGTTCGAAACTGAATTAGGTGGTGTCATTCCGGTCGTTAAAACATCTATTGATGGCACTCGCATTATTGGCCGTCTATGTGCTGGAAACAAAAATGGGCTTCTTGTACCACACACCACTACTGACCAAGAACTTCAGCACTTGAGGAACAGCCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGATTGTCTGCTCTGGGGAATACCATTGCTTGTAATGATCATGTTGCTCTCACACATACTGATCTTGATCGGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTGGAGGTCTTTAGGCAGACAGTAGCGGGCAACGTCCTTGTGGGAAGCTACTGTAGCTTCACGAATAGGGGTGGCTTGGTTCATCCACATACGTCTGTTGAAGATCTGGATGAGCTATCAACCCTTCTTCAGGTCCCTTTAGTTGCTGGAACCGTGAATCGTGGAAGTGAAGTGATTGCTGCTGGATTGACAGCAAATGATTGGACCGCGTTTTGTGGTTCAGACACCACGGCCACCGAGTTATCGGTCATCGAGAGCGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCGCTAATAGATAGTTACGACAATGACACAAAACCAGTCAAGTTCATATAG | 765 | 45.49 | MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYDNDTKPVKFI | 254 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 341550 | 345717 | + | CmPI595203_02g000280.1 | Cmu02g0028 | 408077 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu02g0028 | 254 | NCBIfam | translation initiation factor IF-6 | 4 | 224 | IPR002769 | GO:0042256(InterPro)|GO:0043022(InterPro) | |
Cmu02g0028 | 254 | SMART | eIF6neu2 | 3 | 204 | IPR002769 | GO:0042256(InterPro)|GO:0043022(InterPro) | |
Cmu02g0028 | 254 | Pfam | eIF-6 family | 4 | 203 | IPR002769 | GO:0042256(InterPro)|GO:0043022(InterPro) | |
Cmu02g0028 | 254 | CDD | IF6 | 2 | 223 | IPR002769 | GO:0042256(InterPro)|GO:0043022(InterPro) | |
Cmu02g0028 | 254 | SUPERFAMILY | Pentein | 1 | 224 | - | - | |
Cmu02g0028 | 254 | PIRSF | Transl_init_IF-6 | 1 | 226 | IPR002769 | GO:0042256(InterPro)|GO:0043022(InterPro) | |
Cmu02g0028 | 254 | Hamap | Translation initiation factor 6 [eif6]. | 1 | 245 | IPR002769 | GO:0042256(InterPro)|GO:0043022(InterPro) | |
Cmu02g0028 | 254 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 6 | 1 | 244 | IPR002769 | GO:0000054(PANTHER)|GO:0000460(PANTHER)|GO:0000470(PANTHER)|GO:0005730(PANTHER)|GO:0005829(PANTHER)|GO:0030687(PANTHER)|GO:0042256(InterPro)|GO:0043022(InterPro)|GO:0043023(PANTHER)|GO:1902626(PANTHER) | |
Cmu02g0028 | 254 | FunFam | Eukaryotic translation initiation factor 6 | 1 | 225 | - | - | |
Cmu02g0028 | 254 | Gene3D | - | 1 | 225 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g0028 | Cmu-Chr2:341550 | Cmu06g1254 | Cmu-Chr6:23712739 | 2.80E-136 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu02g0028 | K03264 | - | csv:101212091 | 460.685 |