Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0028 ATGGCCACTAGGCTTATGTTTGAGAACTCATGTGAAATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCCTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTACGTTCGAAACTGAATTAGGTGGTGTCATTCCGGTCGTTAAAACATCTATTGATGGCACTCGCATTATTGGCCGTCTATGTGCTGGAAACAAAAATGGGCTTCTTGTACCACACACCACTACTGACCAAGAACTTCAGCACTTGAGGAACAGCCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGATTGTCTGCTCTGGGGAATACCATTGCTTGTAATGATCATGTTGCTCTCACACATACTGATCTTGATCGGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTGGAGGTCTTTAGGCAGACAGTAGCGGGCAACGTCCTTGTGGGAAGCTACTGTAGCTTCACGAATAGGGGTGGCTTGGTTCATCCACATACGTCTGTTGAAGATCTGGATGAGCTATCAACCCTTCTTCAGGTCCCTTTAGTTGCTGGAACCGTGAATCGTGGAAGTGAAGTGATTGCTGCTGGATTGACAGCAAATGATTGGACCGCGTTTTGTGGTTCAGACACCACGGCCACCGAGTTATCGGTCATCGAGAGCGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCGCTAATAGATAGTTACGACAATGACACAAAACCAGTCAAGTTCATATAG 765 45.49 MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYDNDTKPVKFI 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 341550 345717 + CmPI595203_02g000280.1 Cmu02g0028 408077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0028 254 NCBIfam translation initiation factor IF-6 4 224 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cmu02g0028 254 SMART eIF6neu2 3 204 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cmu02g0028 254 Pfam eIF-6 family 4 203 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cmu02g0028 254 CDD IF6 2 223 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cmu02g0028 254 SUPERFAMILY Pentein 1 224 - -
Cmu02g0028 254 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cmu02g0028 254 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cmu02g0028 254 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 244 IPR002769 GO:0000054(PANTHER)|GO:0000460(PANTHER)|GO:0000470(PANTHER)|GO:0005730(PANTHER)|GO:0005829(PANTHER)|GO:0030687(PANTHER)|GO:0042256(InterPro)|GO:0043022(InterPro)|GO:0043023(PANTHER)|GO:1902626(PANTHER)
Cmu02g0028 254 FunFam Eukaryotic translation initiation factor 6 1 225 - -
Cmu02g0028 254 Gene3D - 1 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0028 Cmu-Chr2:341550 Cmu06g1254 Cmu-Chr6:23712739 2.80E-136 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0028 K03264 - csv:101212091 460.685