Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0060 ATGCCTTCCCTTCTCTTTCTCTTCTTCCTCCCTCTACATTTCTCTTACGCCGCCCACCAAACTCTCCGCCCTGAGATCGCTGCCGCCTGCACTGCCACTCGCTTCCCGGACCAATGCGCATCCTCCATCTCCCAATCCAACCGTCTTCCCCAGAATCCCACGCCGCTGCAGATTATTCAGGCCGCCGTCTGGCTCTCCTCGGAGAATCTCAAAACTGCCAAATCCATGGTGAAGGCCATTCTCGATTCCTCCAAGGAGAGCCCCAACCGCAACCGCACCGCCGCGGCGCTGAGCTGCCTGGAGGCGCTGGGTTACTCCGAGTACCGAATTTCGCTTTCCAACGACGCCATTCCGCTCGGTCGGACTAAAGACGCGCGCGCGTGGCTAAGCGCGTCGCTCCTCTACCAGACTGGTTGCCGGTCCGGTCTCGTGTACGTGAACGACACGCGCGAAGTGGATCAAATGATGTCGTTTCTTGACAATCTGACCGTACTGTCGAGCAACGCGCTGAGCATGGCGGTGGCGTACGATATTTTCGGGAATGAGACGGCGGCGTGGGGCCCACCGAGGACGGAGCGAGACGGGTTCTGGGAAGGGAGTAGTGGGACGGCGGTGGGGACGGGTATGAGGATTCCGGCAAAGACGGAGGCGAACGCGACGGTGTGTAAAGACGGGAGTGAGGGATGTTACACGACGGTGCAGGCGGCGGTGGAGGCGGCGCCGGGAAACTCGGCGGTGAGATTTGTGATACACATAAAGGAAGGGGTTTACGAGGAGAGTCTGAGAGTGGGATTGGAGAAGAAGAATTTGGTGTTTTTGGGAGATGGGATGGGCAAAACGGTCATTACGGGCTCTTTGAATGTGGGCCAGCCTGGGATCTCAACCTACAATTCGGCTACTGTCGGAGTTCTTGGGGATGGATTCATGGCGAGTGGACTCACCATTCAAAACACAGCAGGCCCTAATGCCCACCAAGCTGTGGCCTTTAGATCAGACAGTGATCTCTCAATCATACATAATTGTGAGTTTATAGGCAATCAAGACACTCTCTACGCCCATTCCCTCCGCCAATTCTACAACTCCTGTCGAATCCTAGGCAATGTTGACTTCATCTTTGGCAACTCAGCCTCCATCTTCCTAAACTGTCATATCTTAGTCCGTCCTCGCCAGCTCAACCCTCGGCTCGGAGACGACAACCCCATAACTGCACACGGGAGGACCGACCCTGCGCAGTCGACTGGGTTCGTGTTCCAAAACTGCCTTGTCAACGGCACTGAGGAGTTCATGTCGTTGTACTATGCCAATCCTAAGGTGCATAGGACCTTCTTGGGGCGACCGTGGAAGGAGTATTCGAGGACGATTTTTATACATTGTGATCTTGAAGCTCTTGTTTCGTCGTCTGGGTGGATGCCATGGAGTGGGGATTTTGGTTTGAAGACATTATATTATGGGGAGTTTGAGAATTTTGGAATTGGATCGAATTCCTCGGAGCGAGTTCGATGGAGTAACCAGATCCCTGCTGAGTATGTTTTTAGTTACTCTGTTCAGAATTTCATCCAAGGAAATGAATGGATTCCTTCATCTTAG 1587 53.81 MPSLLFLFFLPLHFSYAAHQTLRPEIAAACTATRFPDQCASSISQSNRLPQNPTPLQIIQAAVWLSSENLKTAKSMVKAILDSSKESPNRNRTAAALSCLEALGYSEYRISLSNDAIPLGRTKDARAWLSASLLYQTGCRSGLVYVNDTREVDQMMSFLDNLTVLSSNALSMAVAYDIFGNETAAWGPPRTERDGFWEGSSGTAVGTGMRIPAKTEANATVCKDGSEGCYTTVQAAVEAAPGNSAVRFVIHIKEGVYEESLRVGLEKKNLVFLGDGMGKTVITGSLNVGQPGISTYNSATVGVLGDGFMASGLTIQNTAGPNAHQAVAFRSDSDLSIIHNCEFIGNQDTLYAHSLRQFYNSCRILGNVDFIFGNSASIFLNCHILVRPRQLNPRLGDDNPITAHGRTDPAQSTGFVFQNCLVNGTEEFMSLYYANPKVHRTFLGRPWKEYSRTIFIHCDLEALVSSSGWMPWSGDFGLKTLYYGEFENFGIGSNSSERVRWSNQIPAEYVFSYSVQNFIQGNEWIPSS 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 625404 628576 + CmPI595203_02g000600.1 Cmu02g0060 408109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0060 528 Pfam Pectinesterase 218 522 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cmu02g0060 528 NCBIfam pectinesterase inhibitor domain 4 171 IPR006501 GO:0004857(InterPro)
Cmu02g0060 528 Gene3D - 212 528 IPR012334 -
Cmu02g0060 528 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 175 IPR035513 -
Cmu02g0060 528 FunFam Probable pectinesterase/pectinesterase inhibitor 51 24 175 - -
Cmu02g0060 528 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 172 IPR035513 -
Cmu02g0060 528 PANTHER PECTINESTERASE 18 527 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cmu02g0060 528 SUPERFAMILY Pectin lyase-like 216 527 IPR011050 -
Cmu02g0060 528 Pfam Plant invertase/pectin methylesterase inhibitor 26 172 IPR006501 GO:0004857(InterPro)
Cmu02g0060 528 SMART PMEI_2 21 172 IPR006501 GO:0004857(InterPro)
Cmu02g0060 528 FunFam Pectinesterase 4 215 528 - -
Cmu02g0060 528 CDD PMEI-like_3 28 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0060 Cmu-Chr2:625404 Cmu05g0821 Cmu-Chr5:7424347 8.00E-77 dispersed
Cmu02g0060 Cmu-Chr2:625404 Cmu02g0062 Cmu-Chr2:630837 5.50E-211 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0060 - - - 0.0