Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0071 ATGGCCGATTTCCCAAAACATAAAACAATCTCTGTCTCCACCAGATGCGGGGCGAGTTTCGTAGTTGACATTGTCTCAGAACAATTTGAAGGGAAAAGGTTGCTTGAGCGACATCGATTGGTGAATGCCGCTCTGGAGGAGGAAATGAAACAGATTCATGCTCTCTCCATCAAGAAGGCTCTGACCCCTCAACAATGGAAGCAACAACAAGAAGAATCTGAAAAATCAAAATCTGCAGCTTAG 243 44.44 MADFPKHKTISVSTRCGASFVVDIVSEQFEGKRLLERHRLVNAALEEEMKQIHALSIKKALTPQQWKQQQEESEKSKSAA 80
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 728324 728566 - CmPI595203_02g000710.1 Cmu02g0071 408120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0071 80 Pfam BolA-like protein 7 64 IPR002634 -
Cmu02g0071 80 PIRSF BolA 2 80 IPR002634 -
Cmu02g0071 80 MobiDBLite consensus disorder prediction 61 80 - -
Cmu02g0071 80 PANTHER BOLA-LIKE PROTEIN-RELATED 12 71 IPR045115 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0006879(PANTHER)|GO:0051536(PANTHER)|GO:0051537(InterPro)|GO:0097428(InterPro)
Cmu02g0071 80 Coils Coil 35 55 - -
Cmu02g0071 80 Gene3D - 3 79 IPR036065 -
Cmu02g0071 80 SUPERFAMILY BolA-like 12 70 IPR036065 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0071 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1235 . . . . Bpe15g00396 Bpe13g00012 . . . Cmo20g01081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01060 . . Bma03g01035 Bma06g00528 Sed05g3844 . . . Cma20g01074 . . . . Bhi10g02340 Tan07g0888 Cmetu11g1866 . Hepe08g1259 . . Cla02g00073 Cam02g0074 Cec02g0075 Cco02g0068 Clacu02g0072 Cmu02g0071 Cre02g0411 Lsi10g00708 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012275 1 1 0 2 2 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 28