Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0072 ATGCTGGAAATTTCGCCTTCGCCGGAAAACTCTACCGCCGTCGCCGCTGCCGTCGTGAACCGGGCCGCCGAGGAAGACGGTGCAGCAGCCTCTGCCGGATTTTCGGAGGACGCTGACCGGAACTGGCCCGGTAATCGGTGGCCGCGAGAGGAGACTATGGCTTTGCTGAAGGTTCGGTCGAGTATGGATACTGCGTTTAGGGATGCAAGTTTGAAAGCTCCTCTATGGGAAGAAGTTTCCAGGAAATTGGCTGAGCTTGGGTATAATCGAAATGCGAAAAAATGCAAAGAGAAGTTTGAGAACATTTATAAGTATCACAAAAGGACTAAAGATGGAAGATCAGGGAAAGCGAATGGGAAAAATTATAGGTATTTTGAGCAATTAGAAGCTCTAGATAATAATCCATTGCTTCCCTCTCAAGCTGATTCAATGGAAGAAATCCCAAGGATTATCCCAAACAATGTTGTGCACAATGCAATTCCATGTTCCGTAGTAAACCCGAGTGCAAATTTTGTTGAAACTACCACCACTTCAATATCGACGTCGACCACATCTTGTTCGAGTAAAGAATCGGGTGGGACGAGGAAGAAGAAGAGGAAGTTTGTGGAGTTCTTTGAGAGGTTAATGAACGAGGTGATTGAGAAGCAGGAGAAATTGCAAAAGAAGTTTGTGGAGGCATTGGAGAAATGTGAAGTAGAGAGGTTAGCTAGAGAAGAATGGAAGATGCAAGAATTAGCTCGAATCAAGAAAGAGCGAGAACGTTTAAATCAAGAGAGATCGATTGCAGCTGCAAAGGATGCAGCTGTTCTTTCATTCTTGAAGGTTTTCTCTGAACAAGTGGGCACAGTGCAGTTCCCGGAGAACTTGATTTCAGTGGAGAATTTGACTGAGAAGCAAGATGATGGTAATGTTGACAGAAACACAAGCACTCAAGAGAATATCAACAATGGTAATTCGAATCAGATTAGCTCGTCCCGATGGCCGAAAGAAGAGATTGATGCTCTGATTCAGCTAAGGACTAATCTGCAGATGAAGTACCAAGATAATGGCCCTAAAGGTCCTCTCTGGGAGGAAATATCATTAGCCATGAAGAAACTTGGGTATGATAGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAAAACATCAACAAATACTTCAAAAGAGTAAAGGAAAGCAACAAAAAGCGACCTGAGGATTCAAAGACATGTCCTTATTTCCAGCAGCTTGATGCATTGTACAAACAGAAATCCAAGAAAATTGTCAACAATCCAGCTAATCCAAATTACGAACTAAAACCCGAGGAACTATTGATGCACATGATGGGCGGCCAAGAAGAAAGCCACCAACCTGAATCAGCAACAGACGACGGTGAAGCTGAGAATGCCGATCAGAACCAAGAAGACGAAGATGAAGACGAAGATTATCAGATTGTGGCCAACAACAACAGTAATCAAATGGAAGTTAACTAG 1470 43.47 MLEISPSPENSTAVAAAVVNRAAEEDGAAASAGFSEDADRNWPGNRWPREETMALLKVRSSMDTAFRDASLKAPLWEEVSRKLAELGYNRNAKKCKEKFENIYKYHKRTKDGRSGKANGKNYRYFEQLEALDNNPLLPSQADSMEEIPRIIPNNVVHNAIPCSVVNPSANFVETTTTSISTSTTSCSSKESGGTRKKKRKFVEFFERLMNEVIEKQEKLQKKFVEALEKCEVERLAREEWKMQELARIKKERERLNQERSIAAAKDAAVLSFLKVFSEQVGTVQFPENLISVENLTEKQDDGNVDRNTSTQENINNGNSNQISSSRWPKEEIDALIQLRTNLQMKYQDNGPKGPLWEEISLAMKKLGYDRSAKRCKEKWENINKYFKRVKESNKKRPEDSKTCPYFQQLDALYKQKSKKIVNNPANPNYELKPEELLMHMMGGQEESHQPESATDDGEAENADQNQEDEDEDEDYQIVANNNSNQMEVN 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 739814 741546 + CmPI595203_02g000720.1 Cmu02g0072 408121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0072 489 Coils Coil 202 229 - -
Cmu02g0072 489 ProSiteProfiles Myb-like domain profile. 319 383 IPR001005 -
Cmu02g0072 489 PANTHER FI21293P1 38 463 - -
Cmu02g0072 489 SMART sant 323 385 IPR001005 -
Cmu02g0072 489 SMART sant 43 105 IPR001005 -
Cmu02g0072 489 CDD GT1 325 390 - -
Cmu02g0072 489 Coils Coil 238 265 - -
Cmu02g0072 489 Gene3D - 47 108 - -
Cmu02g0072 489 Gene3D - 327 388 - -
Cmu02g0072 489 ProSiteProfiles Myb-like domain profile. 45 103 IPR001005 -
Cmu02g0072 489 MobiDBLite consensus disorder prediction 306 326 - -
Cmu02g0072 489 Pfam Myb/SANT-like DNA-binding domain 45 131 IPR044822 -
Cmu02g0072 489 Pfam Myb/SANT-like DNA-binding domain 325 412 IPR044822 -
Cmu02g0072 489 MobiDBLite consensus disorder prediction 440 489 - -
Cmu02g0072 489 FunFam Trihelix transcription factor GT-2 47 108 - -
Cmu02g0072 489 MobiDBLite consensus disorder prediction 296 326 - -
Cmu02g0072 489 FunFam Trihelix transcription factor GT-2 327 388 - -
Cmu02g0072 489 MobiDBLite consensus disorder prediction 456 476 - -
Cmu02g0072 489 CDD GT1 45 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1035 Cmu-Chr1:15930410 Cmu02g0072 Cmu-Chr2:739814 9.80E-36 dispersed
Cmu02g0072 Cmu-Chr2:739814 Cmu08g0331 Cmu-Chr8:9317585 3.80E-97 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5658 PF13837 Myb_DNA-bind_4 3.80E-22 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0072 - - - 0.0