Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0119 ATGGGTGGTTGTGTCTCTACAAGCAGCCATAGTACATGCAGTAGCCAAAGCAATGGGGAAGCAATTTCTTCTTCATGTATGGGAATTGGATTTCGAGGTCGAAAGCGAACGAAAAGAACATTCTCCGACCATGTTTATGCTCTTCAGAATCTTCCTTCAGCTCCCAACAGGATATTCATGAATGGAAAAAGTCGTTCTTCTTGTATTTTCACGCAACAGGGTCGCAAGGGCATAAACCAGGACGCCATGGTTGTGTGGGAAGATTTCATGTCGGAGGACACGATCTTTTGTGGTGTATTCGATGGACATGGACCTTACGGTCATCTCGTTGCTCGAAAAGTGAGGGATACATTGCCTATAAAGTTGCTGTCATTCTTCCAGTCTCCTCAGTTGAAGCAAAATGACTCTGGTAAAACCTGTTTCCAGAGGAATTTGAAGACACCTCCAGATTGTGAAGATTCTGAGAAAGATGGTTTTGTAGAGGACTCGCAGAATTCGGTATGGAGAGATGCTTTTTTGAACTCGTATAAAGCTATGGATAAGGAGTTGAGATCACACCCTAATCTGGACTGCTTTTGTAGTGGTAGTACTGCAGTCACCATAGTTAAACAGGGGTCAAATCTCTTCATGGGGTATATAGGCGACTCAAGAGCAATCCTTGCCTCGAAGGACGCCAATGATTCCACAGTGGCCGTCCAATTGACCGTGGATCTTAAGCCAGATTTACCAAGAGAAGCTGAAAGAATAAAGCGGTGTAAAGGTAGGGTCTTTGCATTGCAGGATGAGCCTGAAGTGCCAAGGGTGTGGTTACCTTTCGATGATGCGCCCGGTTTAGCAATGGCTCGAGCATTTGGCGACTTCTGTTTGAAAGAATATGGAGTTATCTCTATACCCGAATTCTCTCATCGAACCCTCACCGACGCTGATCAGTTCATCGTTCTTGCATCAGATGGGGTATGGGATGTGTTGAGCAATGAAGAGGTGGTTGACATAGTGTCCTCAGCCCCAACCCGGGCATCAGCTGCAAGGAGGATGGACTCTGAATCTGACTGTGACGAACAAGGCTTCTCATCTGCAACATTGCGTAGTAATCATTCGGGTACTGCTATCGAGTCCGATGATGGCCAGAGGTCTGAGCCATGTTTGCAAAGGAATAACACTGTCAGATCATCCGAAGAAGGCAAGGGATTACCTGTCGAAGACAGGGAGGTTGGTGCTGCTGTACCTGCAGAAGATCAAAACTGGTTGGGTTTGGAAGGAGTCACTCGAGTGAACTCACTTGTTCAACTTCCTAGATTTTCCGAGGAAAGGCCAGTGTCATAG 1323 46.33 MGGCVSTSSHSTCSSQSNGEAISSSCMGIGFRGRKRTKRTFSDHVYALQNLPSAPNRIFMNGKSRSSCIFTQQGRKGINQDAMVVWEDFMSEDTIFCGVFDGHGPYGHLVARKVRDTLPIKLLSFFQSPQLKQNDSGKTCFQRNLKTPPDCEDSEKDGFVEDSQNSVWRDAFLNSYKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAILASKDANDSTVAVQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRTLTDADQFIVLASDGVWDVLSNEEVVDIVSSAPTRASAARRMDSESDCDEQGFSSATLRSNHSGTAIESDDGQRSEPCLQRNNTVRSSEEGKGLPVEDREVGAAVPAEDQNWLGLEGVTRVNSLVQLPRFSEERPVS 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1320331 1322219 + CmPI595203_02g001190.1 Cmu02g0119 408168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0119 440 SMART PP2C_4 55 370 IPR001932 -
Cmu02g0119 440 MobiDBLite consensus disorder prediction 1 21 - -
Cmu02g0119 440 Pfam Protein phosphatase 2C 167 335 IPR001932 -
Cmu02g0119 440 SUPERFAMILY PP2C-like 56 344 IPR036457 -
Cmu02g0119 440 CDD PP2Cc 65 342 IPR001932 -
Cmu02g0119 440 PANTHER PROTEIN PHOSPHATASE 67 345 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cmu02g0119 440 MobiDBLite consensus disorder prediction 352 392 - -
Cmu02g0119 440 MobiDBLite consensus disorder prediction 336 408 - -
Cmu02g0119 440 Gene3D - 59 376 IPR036457 -
Cmu02g0119 440 ProSiteProfiles PPM-type phosphatase domain profile. 66 440 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0119 Cmu-Chr2:1320331 Cmu10g1190 Cmu-Chr10:4637610 1.50E-100 dispersed
Cmu02g0119 Cmu-Chr2:1320331 Cmu02g1730 Cmu-Chr2:31174190 7.90E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0119 - - - 0.0