Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0132 ATGACAATTTTTTCCTTCTTCACTAGAGCTTCGAGAGCTTTTCATGGCTCCCCTGCATATTCAAAGCTTCTACTCATCAGCACCCTAAGTAGCGGAGGTCTATTGGCATATGCAGATTCACAATCAGACGTTGACAGTCCTATTGAAGAGTGCCGAAAAAAGAGAATTCTAGTGCTTGGAACAGGATGGGCCGGTACCAGTTTCCTCAAGGATCTGGATGCTTCAAAATATGATGTTCAGGTTGTTTCGCCTCAAAATTATTTCTCATTTACTCCTTTATTGCCTAGTGTTACATGTGGATCAGTTGAAGCACGAAGCATTGTTGAACCAGTTCGAAACATCGTGAAGAAGAGAAAAGGTGAAATTAAATTCTGGGAAGCTGAATGCATTAGGATTGATGCTGCTGACAAGAAGGTTTTCTGCCGGTCTAATGTTGACAACAACTTGGTTGGAAATAGGGAGTTTGCCTTAGAATATGACTATTTGATAATAGCAATGGGAGCGCAAGTTAATACTTTTAATACTCCTGGTGTGAAGGAGAACTGCCATTTTCTCAAGGAAGTGGAAGATGCTCAGAAGATCCGCAGAAGTGTGATAGATTGCTTTGAAATGGCGGTGATTCCTAGTCTAAGTGAAGAAGAGCGAAGGAGAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACTGGGGTTGAATTTGCTGCAGAGCTTCATGACTTTTTTGAAGAAGATTTAGTAAACTTATATCCTTCGGTTAAAGATCTGGTGAAAATTTCAGTAATTCAATCCGGAGATCACATCTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCCGAGCAAAAATTCCTAAGGGACGGTATCGATGTGTACACAGGATGTCGAGTTGTCAGTGTATCTGATAAAGAAATTAAGATGAAGGTGAAATCAACTGGAGAACTTTGTTCAATGCCGCATGGACTAATTGTGTGGTCTACGGGCATTATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGCCAGGGTAGTAGACGCATTCTAGCCACTGATGAATGGCTTCAAGTGAAGGGCGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGTAAAATTATGGAAGATATCGCCGCCATATTTAAAGCCGCAGACAAAGATAACTCTGGAACCCTGACAGTTACAGAATTTCAAGATGTTCTAGATGATATCATCATAAGGTATCCTCAAGTAGAAATATATTTGAGGAGCAAACATCTACGCGATGTAAAAGATCTATTAAAAGATTCTCAGGGACATGAGAACGAAATAGATATTGAAGGATTTAAGTCAGCTCTTTCTCATGCTGACACGCAGATGAAAAGTCTGCCTGCTACTGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTTGCAGGTGCTTCAACCGCAGGGAGCATTGCACTGAGAATCCTGAAGGCCCTCGACGTTTTAAGAGTTCTGGACGTCATCAGTTTCTTCCGTTTCGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGGGGAGAACAAGCAGCTGCAGAACTCCCTGGAGATTGGGTTTCCATGGGTCACAGCACTCAATGGCTATGGTATTCTCAAGCAAGTCAGCTGGCGCACAAGGTATCTAGTGGTATCAGATTGGACAAGGAAGTTCATATTTGGAAGAGACTCAAGCCGCATCTGAAGCTAAACTCAGCGTATCTTCAAGTTTTTAAACAAAAGCGAACCGTTCGGTTGGCATCTGTTGGCTGTTGCAAATCGAATTGGGCACCCTCGCAACAATACGGTGCGTTTCCAGAACTTCCCGGAGCGCAAGCAAACTGTGGATATGATCAAACGGTGCAAATTACCCCTGTGATCGCTGACGAACTCCTCCTCGAAGTAGAATTTCCCGGCAATTTTTCTAGGTTTGTCTGA 1947 42.99 MTIFSFFTRASRAFHGSPAYSKLLLISTLSSGGLLAYADSQSDVDSPIEECRKKRILVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGSVEARSIVEPVRNIVKKRKGEIKFWEAECIRIDAADKKVFCRSNVDNNLVGNREFALEYDYLIIAMGAQVNTFNTPGVKENCHFLKEVEDAQKIRRSVIDCFEMAVIPSLSEEERRRNLHFVIVGGGPTGVEFAAELHDFFEEDLVNLYPSVKDLVKISVIQSGDHILNAFDERISSFAEQKFLRDGIDVYTGCRVVSVSDKEIKMKVKSTGELCSMPHGLIVWSTGIMTRPVVKDFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATIDQRKIMEDIAAIFKAADKDNSGTLTVTEFQDVLDDIIIRYPQVEIYLRSKHLRDVKDLLKDSQGHENEIDIEGFKSALSHADTQMKSLPATAQVAAQQGAYLCRCFNRREHCTENPEGPRRFKSSGRHQFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSQASQLAHKVSSGIRLDKEVHIWKRLKPHLKLNSAYLQVFKQKRTVRLASVGCCKSNWAPSQQYGAFPELPGAQANCGYDQTVQITPVIADELLLEVEFPGNFSRFV 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1403542 1411207 + CmPI595203_02g001320.1 Cmu02g0132 408181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0132 648 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 45 405 - -
Cmu02g0132 648 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Cmu02g0132 648 PANTHER NADH DEHYDROGENASE 42 544 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Cmu02g0132 648 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 380 IPR023753 GO:0016491(InterPro)
Cmu02g0132 648 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Cmu02g0132 648 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
Cmu02g0132 648 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
Cmu02g0132 648 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509(InterPro)
Cmu02g0132 648 SMART efh_1 380 408 IPR002048 GO:0005509(InterPro)
Cmu02g0132 648 Gene3D - 46 397 - -
Cmu02g0132 648 Gene3D - 423 552 - -
Cmu02g0132 648 SUPERFAMILY FAD/NAD(P)-binding domain 53 272 IPR036188 -
Cmu02g0132 648 SUPERFAMILY EF-hand 329 456 IPR011992 -
Cmu02g0132 648 SUPERFAMILY FAD/NAD(P)-binding domain 219 373 IPR036188 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0132 Cmu-Chr2:1403542 Cmu02g1946 Cmu-Chr2:33320089 1.80E-62 dispersed
Cmu05g2248 Cmu-Chr5:31910721 Cmu02g0132 Cmu-Chr2:1403542 8.70E-06 dispersed
Cmu01g2211 Cmu-Chr1:34541070 Cmu02g0132 Cmu-Chr2:1403542 1.10E-58 wgd
Cmu02g0132 Cmu-Chr2:1403542 Cmu02g1717 Cmu-Chr2:31069105 5.00E-214 wgd
Cmu02g0132 Cmu-Chr2:1403542 Cmu03g1152 Cmu-Chr3:5947518 3.60E-220 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0132 K03885 - csv:101203130 1033.09