Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0180 ATGCTTGTATCATCTTTTTCGAACATCGTTGGAGCAAAAAAATTGACGGTCGGATTTTATCAGGGTAGCTGCCCGGGGGTGGAGTATATTGTTGCCAAAACAGTAGCTCAATATATTAAGAAACAACCAACTCTTGCTGCTTCTTTGTTGAGAATACACTTCCATGACTGCTTTGTTAGGGGTTGTGATGGTTCTGTGCTATTAAATTCCAAGCCAAACAACCAAGCTGAGAAAGATTCTTTTCCCAACCTTAGTTTAAGAGGTTTTAATGTCGTTGACGCTGTTAAAGCTGCTGTCGAAAAGCAATGCCCCAGTATCGTTTCTTGTGCTGATATTCTCGCTTTGATAGCTCGCGACGCCGTTAGAATGATTGGAGGGCCGCTGTGGGAAGTTCCAACAGGAAGAAGAGATGGAAGAGTATCCATCTCCAGAGAAGTGTTGATCAATTTGCCGCCTCCCTTCGCTAATATCTCTTCTCTCAAAACAAGTTTCCTCTCCAAAGGTCTTTCTGTCAAAGATCTGGTTGTTTTATCCGGATCACACACAATCGGAGTCTCTCACTGCACCTCCTTCTCCAACCGTCTCTACAATTTCACCGGCAAAGGCGACGCTGATCCTAAACTAGACAAATACTACGTCGTTGCACTCAAGAACAAATGCAAGCCAAATGACCAGAAAACCATCGTCGAGATGGATCCTGGAAGCTTCAAGACCTTCGATCAAGGTTACTACACTCTCGTCTCCAAGAGAAGAGGATTGTTCCAGTCCGATTCTGCTCTTCTCGACGATCCTGATACCAAAGCTTACGTACTGCTTCAGGCAAGTACACGTGGCGCTACTTTCGCCACCGATTTCGCTAAATCCATGGTGAATATGGGGAATATCGGTGTCCTCACCGGCACCGACGGTGAAATTAGGCGGCGATGTGCTTTTGTTAATTGA 942 45.22 MLVSSFSNIVGAKKLTVGFYQGSCPGVEYIVAKTVAQYIKKQPTLAASLLRIHFHDCFVRGCDGSVLLNSKPNNQAEKDSFPNLSLRGFNVVDAVKAAVEKQCPSIVSCADILALIARDAVRMIGGPLWEVPTGRRDGRVSISREVLINLPPPFANISSLKTSFLSKGLSVKDLVVLSGSHTIGVSHCTSFSNRLYNFTGKGDADPKLDKYYVVALKNKCKPNDQKTIVEMDPGSFKTFDQGYYTLVSKRRGLFQSDSALLDDPDTKAYVLLQASTRGATFATDFAKSMVNMGNIGVLTGTDGEIRRRCAFVN 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1718272 1720777 - CmPI595203_02g001800.1 Cmu02g0180 408229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0180 313 CDD secretory_peroxidase 14 312 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cmu02g0180 313 ProSiteProfiles Plant heme peroxidase family profile. 14 313 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g0180 313 PANTHER PEROXIDASE 25-RELATED 16 309 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cmu02g0180 313 ProSitePatterns Peroxidases active site signature. 46 57 IPR019794 GO:0004601(InterPro)
Cmu02g0180 313 FunFam Peroxidase 18 161 - -
Cmu02g0180 313 PRINTS Plant peroxidase signature 106 116 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g0180 313 PRINTS Plant peroxidase signature 246 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g0180 313 PRINTS Plant peroxidase signature 287 300 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g0180 313 PRINTS Plant peroxidase signature 48 68 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g0180 313 PRINTS Plant peroxidase signature 172 184 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g0180 313 PRINTS Plant peroxidase signature 230 245 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g0180 313 PRINTS Plant peroxidase signature 87 100 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g0180 313 PRINTS Plant peroxidase signature 24 43 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g0180 313 PRINTS Plant peroxidase signature 125 140 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g0180 313 PRINTS Haem peroxidase superfamily signature 232 247 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g0180 313 PRINTS Haem peroxidase superfamily signature 125 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g0180 313 PRINTS Haem peroxidase superfamily signature 107 124 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g0180 313 PRINTS Haem peroxidase superfamily signature 46 60 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g0180 313 PRINTS Haem peroxidase superfamily signature 173 188 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g0180 313 SUPERFAMILY Heme-dependent peroxidases 15 313 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g0180 313 Gene3D - 18 313 - -
Cmu02g0180 313 FunFam Peroxidase 151 292 - -
Cmu02g0180 313 ProSitePatterns Peroxidases proximal heme-ligand signature. 173 183 IPR019793 -
Cmu02g0180 313 Gene3D Peroxidase, domain 2 151 292 - -
Cmu02g0180 313 Pfam Peroxidase 31 273 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0180 Cmu-Chr2:1718272 Cmu02g0861 Cmu-Chr2:10451928 2.00E-91 dispersed
Cmu02g0179 Cmu-Chr2:1703988 Cmu02g0180 Cmu-Chr2:1718272 6.50E-100 tandem
Cmu02g0180 Cmu-Chr2:1718272 Cmu02g0181 Cmu-Chr2:1726103 7.90E-149 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0180 K00430 - csv:101219177 553.132