Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0186 ATGCCAGCCGGAATGATGATTCCAGCGAGAAACACGGCGTCGTCGATGATCGGAAGGAACGGAAGTGTTGGGATGTTTGGGTCTCCAGGCAGCCTTGTTCTTGGTCAGGAAATACAAGGTGTGGAAATGGGAGAAAATGAATATGGGAGAATGAGAGAAACAGAAGAATTTGAGAGTGGAACAAAATCAAGTAGCGAGAACCACGAGGTTGGTTCCGGCGACGACCAACTCAACCAACGCCCCAAAAAGAAGCGTTACCACCGCCACACTCAGCATCAGATCCAACAAATGGAAGCGTTCTTCAAGGAATGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTGAGTAGGGAATTGAATTTAGAGCCATTGCAAGTGAAGTTTTGGTTTCAAAACAAGCGAACTCAGATGAAGACCCATCATGAGCGACATGAAAACACCCAGCTCCGAACAGAAAATGAGAAGCTTAGAGCAGATAATATGAGATATAGAGAAGCTCTTAGTAATGCCACGTGTCCCAATTGTGGAGGTCCGACCGCCATTGGAGAGATGTCCTTTGACGAACATCATCTCAGGCTTGAAAATGCCCGCTTGAGAGAAGAGATCGATCGCATTTCAGCCATAGCAGCAAAATACGTTGGAAAGCCAGTATCAAACTACCCTCTTCTTTCTACACCAATTCCTTCACGTCCTCTAGAACTTGGAATGGGAGGCTATGGAGGCCACGATTCCGGCGGGGACATGTACGGGGCAGCGGACCTTCTCCGGACCATAAGCGCCCCATCGGAAGCCGACAAGCCGATAATTATCGAGCTTGCAGTTGCAGCCATGGAGGAGCTGGTCCGAATGGCTCAGATGGGTGAGCCTTTGTGGATGACAGGGCTTGATGGCTCAACTGCTGTGCTTAATGAAGAGGAATATGTTAGAAGCTTTCCTAGAGGAATTGGTCCTAAGCCCTCTGGGTTCAGTTGTGAAGCTTCCCGTGCTACTGCTGTTGTCATTATGAATCATATTAGCCTCGTTGAGATGCTCATGGATGTGAATCAATGGTCAACAATATTCAGTGGGATTGTGTCGAGAGCTATGACATTAGAAGTATTATCAACCGGCGTTGCTGGAAACTACAACGGAGCATTACAAGTGATGACATCCGAATTACAAGTGCCTTCACCCCTTGTTCCAACTCGGGAGAGCTATTTCGTGAGGTATTGTAAACAACATGGTGAGGGAACATGGGCTGTGGTGGACGTTTCCTTAGACAATTTACGCCCAGCTCCTGCCCTTAGATGTAGAAGAAGGCCATCCGGCTGCTTAATCCAAGAAATGCCCAATGGCTATTCTAAGGTTACCTGGGTTGAGCATGTTGAGGTGGATGATCGTGGGGTTCACAGTTTATACAACCAGCTAGTTAGGTCCGGCCACGCGTTCGGCGCGAGGCGTTGGATTGCCACGTTGGATCGTCAGTGTGAACGGCTTGCCAGTGCCATGGCCACAAGTATTCCTACTGGTGATGCTGGAGTGATAACAAATCAAGAAGGAAGAAAAAGCATGTTGAAGCTGGCGGAGAGAATGGTGATGAGCTTTTGCGGTGGAGTGAGCGCGTCAACCACACACACTTGGACGACTCTATCGGGAACTGGAGCTGACGACGTTAGAGTTATGACAAGAAAGAGTGTTGACGATCCCGGCAGACCTCCCGGCATTGTCCTCAGCGCCGCCACTTCCTTTTGGCTTCCTCTTCCTCCCGACAGAGTCTTCCATTTTCTCAGAGATGAAAATTCTCGTAATGAGTGGGATATTCTTTCAAATGGTGGAGTTGTTCAAGAAATGGCTCACATTGCCAATGGCCGCGACACGGGCAACTGTGTTTCTTTGCTACGAGTTAACAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAAAGCAGCACAGATCAAACAGCCTCGTTTGTAATCTACGCGCCGGTGGACATTGTGTCCATCAACGTCGTACTAAACGGCGGAGATCCTGATTACGTGGCCCTTCTCCCCTCCGGATTCGCCATTCTTCCCGATGGAACCACTGCGTCCAGCGGCGGCGCTGCCAATGGGGTGGCTGAACATGGGTCCGCCGGGTCGCTTTTAACGGTGGCGTTTCAGATTTTGGTTGACTCGCCTCTTTGTCATGTGATAATCCTTGAACCCCTCACTCTCACCTCAGAAGGAGAAAAATGA 2220 49.14 MPAGMMIPARNTASSMIGRNGSVGMFGSPGSLVLGQEIQGVEMGENEYGRMRETEEFESGTKSSSENHEVGSGDDQLNQRPKKKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMKTHHERHENTQLRTENEKLRADNMRYREALSNATCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSNYPLLSTPIPSRPLELGMGGYGGHDSGGDMYGAADLLRTISAPSEADKPIIIELAVAAMEELVRMAQMGEPLWMTGLDGSTAVLNEEEYVRSFPRGIGPKPSGFSCEASRATAVVIMNHISLVEMLMDVNQWSTIFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPAPALRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHSLYNQLVRSGHAFGARRWIATLDRQCERLASAMATSIPTGDAGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPLPPDRVFHFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESSTDQTASFVIYAPVDIVSINVVLNGGDPDYVALLPSGFAILPDGTTASSGGAANGVAEHGSAGSLLTVAFQILVDSPLCHVIILEPLTLTSEGEK 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1759032 1765974 - CmPI595203_02g001860.1 Cmu02g0186 408235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0186 739 MobiDBLite consensus disorder prediction 53 90 - -
Cmu02g0186 739 FunFam Homeobox-leucine zipper protein GLABRA 2 271 490 - -
Cmu02g0186 739 CDD homeodomain 83 141 IPR001356 GO:0003677(InterPro)
Cmu02g0186 739 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 66 720 IPR042160 -
Cmu02g0186 739 SUPERFAMILY Homeodomain-like 67 139 IPR009057 -
Cmu02g0186 739 CDD START_ArGLABRA2_like 266 490 - -
Cmu02g0186 739 Gene3D - 68 157 - -
Cmu02g0186 739 SMART START_1 271 491 IPR002913 GO:0008289(InterPro)
Cmu02g0186 739 Gene3D - 306 486 IPR023393 -
Cmu02g0186 739 FunFam Homeobox-leucine zipper protein HDG1 70 156 - -
Cmu02g0186 739 Coils Coil 146 166 - -
Cmu02g0186 739 SUPERFAMILY Bet v1-like 510 716 - -
Cmu02g0186 739 ProSiteProfiles START domain profile. 262 494 IPR002913 GO:0008289(InterPro)
Cmu02g0186 739 SUPERFAMILY Bet v1-like 264 493 - -
Cmu02g0186 739 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu02g0186 739 SMART HOX_1 81 144 IPR001356 GO:0003677(InterPro)
Cmu02g0186 739 Pfam START domain 272 491 IPR002913 GO:0008289(InterPro)
Cmu02g0186 739 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677(InterPro)
Cmu02g0186 739 Pfam Homeodomain 83 138 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2457 Cmu-Chr1:36523388 Cmu02g0186 Cmu-Chr2:1759032 5.60E-19 dispersed
Cmu02g0186 Cmu-Chr2:1759032 Cmu06g0005 Cmu-Chr6:97544 2.10E-208 dispersed
Cmu01g2156 Cmu-Chr1:34187174 Cmu02g0186 Cmu-Chr2:1759032 2.00E-256 wgd
Cmu02g0186 Cmu-Chr2:1759032 Cmu02g0869 Cmu-Chr2:10740482 0.00E+00 wgd
Cmu02g0186 Cmu-Chr2:1759032 Cmu03g1092 Cmu-Chr3:5380430 2.60E-243 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5672 PF01852 START 1.50E-57 CL0209 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0186 K09338 - csv:101219415 1352.42