Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0189 ATGGTTAATTTTGTTGCTCTGCCGCTGTTGCTATATACTTTGATATGGCTGTTTCAGTTCACCGGTCCGATCTGCTGCCAAAAACCTTCTGTGGTAAACATTGGGGCGGTTTTTACTTTCAATTCCGTCATCGGCAGAGCAGCAAAGCCGGCCATGGAAGCAGCAATCTCCGACATAAACGCCGACCCCAATATCTTGAATGGCATAAAGCTTAACTTCCTCATGGAAGACTCTAATTGTAGTGGCTTCCTGGGCTCCGTTGAAGCTTTGCAGGTACTTGAGAAAGAGATTGTAGCCATGATTGGCCCACAATCCTCAGTAGTGGCTCATGTGATTTCTCAAATTGTTAATGGTTTACAAATTCCTCAAGTATCCTATGCTGCTACTGATCCAACATTATCCACTCTGCAACTCCCTTTCTTCCTCCGAACCACTTTAAGTGACTCTTACCAAATGACTGCCATGGCTGACTTGATTGATTACTATGGCTGGAAAGAAGTCATTGCTATATTTTTGGATGATGATTATGGCAGAAATGGGATATCTTTTCTGGGAGATGAACTTCAGAAGAAAATGTGTCGTATTTCTCATGAATTCCCTTTGTCTTCTATGACTAATCTAACTAAGATCACACAAATACTTAACGATTCTAAATTGCTTGGTCCTCGTGTTTACGTAGTTCATGTAGGCCCTGATCCCCAATTAAGAATCTTCACCATTGCTCATAAACTTGGTATGCTTACAAGCAATTACGTTTGGTTCGCAACCGATTGGCTTTCTACAACTCTTGATTCTTCTTCACCAATAACCAATGGTGCTTCACTTGATATACTTAACGGAGTCGTGGGGTTGCGCCCTCATACTCCAGAGTCTAAACGAAAGAGGGATTTGTGGGATCGGTTGAGCAAAACGCAGCCAAAAGGTTTGACCAATTCTGTGTTGAATGTTTATGGACTGTATGCTTATGATTCAGTATGGGTTGTTGCGAAGGCAGTAGATAAGTTTCTCAAAGAAAATGGGAATATCATAACATTTTCATCCACAGGTAAAGTGTTTGGCTCTAATGGAAGTGGAATTCAATTGGGTAAGCTTAAAGTGTTTGATGGAGGAAGTGATTTACTTAGAATTATTAAGCAAACAGATTACAGAGGTTTAAGTGGGAGAATTCAGTTTGGTGAAGACAGAAATGTTGTAAATGGTAGCTATGATGTGATTAATATTAACCAAAGGGAAATTCGTTTGGTGGGTTATTGGTCTAATGACTCAAGATTTCATTCCCACTTAGATCAAAAACTTGAGAACGTGGTTTGGCCTGGTGGGAAGTCAGAAATACCAAGGGGTTGGGTCATTGCAGATGCTGGAAAGCCTCTGAGAATTGCTTTCCCAAAAAGAGCAAGCTTTGTTGATTTCGTAACTCAATTGAACAACTCCAATATAGTTCGAGGATACGTTATCGATATATTCAAAGAAGCTCTCAAGTTTGTTCCATATGAAGTTCCTTACAAATTTGTGCCTTTTGGGGATGGTAGAGTCAATCCAAGTTATGATGAACTTGTTCAGTCAGTTGCAAATAATGTGTTTGATGGAGCTGTTGGGGACATTGCTATTGTTACGAACCGAACAAAGATTGTCGATTTTTCCCAACCGTATACGACTACGGGGCTTATCATAGTTGCACCAGTTAAAGATTCAAAATCAAGTGCTTGGGTGTTTCTTAAACCATTTACAGTGGAGATGTGGTGTGCAACAGCAGGTTCGTTTGTGGTAATTGGGATTGTTATTTGGATGTTAGAACATCGAATCAACGACCATTTTCGAGGTCCTCCGAAAAGGCAGATTGTCACTATGTGTTTATTCAGCTTTTCAACTCTATTCAAGGCAAATCAAGAAGCAACAATAAGCCCACTTTCTCGACTGGTGATGTTGGTATGGCTGTTCTTATTATTGGTAATAACCTCAAGCTACACAGCAAGTTTGACATCAATCCTTACAATTCAGCAACTTTCTTCTCCAATACGTGGAATTGATGACTTGGTTGCAAGTAATTTGCCAATTGGATATCAAGTAGGATCCTTTGCTTATGACTATCTCACACAAAGCCTTTTCATACCACGTTCCAGACTGGTGAAGCTGGACACCCCTGAAGACTACGAGAAAGCACTGCGCCTTGGCCCAAAAGGAGGAGGTGTGGCAGCCATCATTGATGAACTTCCATATTTGGAGTTGTTTCTGTCTAAGACTAAAGAATTTGGAATGATTGGCCAACCTTTTACAAGGAGTGGATGGGGATTTGCTTTCCAGCGAGGATCTCGACTTGCAGTTGATATGTCAACTGCAATTCTGAGACTCTCGGAGAGCGGGAAACTTCAAGAAATACACGACTTGTGGTTCTGTAAGCTAGGTTGTCCGGGGGATCGGGGAGGAAAGTCAGAGCCAGACCAACTTCAGTTGATCAGTTTCTGGGGTTTGTATTTGCTTTGTGGAATCATTTCCCTTGCTGCACTCTTCCTGTTTCTATTAAGACTAATTCACCAGTATATCCGTTATCAAAGACACCATCAGCGTCGTCGTTCAGAGGAAGTTACACCATTGCCTGTTCCATCGAACACCAGCTGTACTCAGACCATTCAAAACTTTATAGGGTTTATTGACGAGAAGGAAGAAGCCATCAAGAGCTTCTTCCTACATGGTGCTCAAAATGGGAACCAACTCCACAATCATTCCCAAAATGCCAAGGAGAAGGCCGATTCAGAGATACAGCTAGGGACCTCGAGTATGAATCGAGGATAA 2790 41.54 MVNFVALPLLLYTLIWLFQFTGPICCQKPSVVNIGAVFTFNSVIGRAAKPAMEAAISDINADPNILNGIKLNFLMEDSNCSGFLGSVEALQVLEKEIVAMIGPQSSVVAHVISQIVNGLQIPQVSYAATDPTLSTLQLPFFLRTTLSDSYQMTAMADLIDYYGWKEVIAIFLDDDYGRNGISFLGDELQKKMCRISHEFPLSSMTNLTKITQILNDSKLLGPRVYVVHVGPDPQLRIFTIAHKLGMLTSNYVWFATDWLSTTLDSSSPITNGASLDILNGVVGLRPHTPESKRKRDLWDRLSKTQPKGLTNSVLNVYGLYAYDSVWVVAKAVDKFLKENGNIITFSSTGKVFGSNGSGIQLGKLKVFDGGSDLLRIIKQTDYRGLSGRIQFGEDRNVVNGSYDVININQREIRLVGYWSNDSRFHSHLDQKLENVVWPGGKSEIPRGWVIADAGKPLRIAFPKRASFVDFVTQLNNSNIVRGYVIDIFKEALKFVPYEVPYKFVPFGDGRVNPSYDELVQSVANNVFDGAVGDIAIVTNRTKIVDFSQPYTTTGLIIVAPVKDSKSSAWVFLKPFTVEMWCATAGSFVVIGIVIWMLEHRINDHFRGPPKRQIVTMCLFSFSTLFKANQEATISPLSRLVMLVWLFLLLVITSSYTASLTSILTIQQLSSPIRGIDDLVASNLPIGYQVGSFAYDYLTQSLFIPRSRLVKLDTPEDYEKALRLGPKGGGVAAIIDELPYLELFLSKTKEFGMIGQPFTRSGWGFAFQRGSRLAVDMSTAILRLSESGKLQEIHDLWFCKLGCPGDRGGKSEPDQLQLISFWGLYLLCGIISLAALFLFLLRLIHQYIRYQRHHQRRRSEEVTPLPVPSNTSCTQTIQNFIGFIDEKEEAIKSFFLHGAQNGNQLHNHSQNAKEKADSEIQLGTSSMNRG 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1787955 1793873 - CmPI595203_02g001890.1 Cmu02g0189 408238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0189 929 CDD PBP1_GABAb_receptor_plant 33 424 IPR044440 -
Cmu02g0189 929 Pfam Receptor family ligand binding region 48 408 IPR001828 -
Cmu02g0189 929 Gene3D - 745 804 - -
Cmu02g0189 929 Gene3D - 459 567 - -
Cmu02g0189 929 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 874 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cmu02g0189 929 SUPERFAMILY Periplasmic binding protein-like I 25 449 IPR028082 -
Cmu02g0189 929 SUPERFAMILY Periplasmic binding protein-like II 435 797 - -
Cmu02g0189 929 Gene3D - 147 422 - -
Cmu02g0189 929 MobiDBLite consensus disorder prediction 904 929 - -
Cmu02g0189 929 Pfam Ligand-gated ion channel 798 829 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cmu02g0189 929 Gene3D - 568 700 - -
Cmu02g0189 929 FunFam Glutamate receptor 147 306 - -
Cmu02g0189 929 PIRSF IGluLR_plant 1 927 IPR017103 -
Cmu02g0189 929 SMART GluR_14 456 799 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cmu02g0189 929 FunFam Glutamate receptor 694 801 - -
Cmu02g0189 929 Pfam Bacterial extracellular solute-binding proteins, family 3 470 576 IPR001638 -
Cmu02g0189 929 FunFam Glutamate receptor 568 698 - -
Cmu02g0189 929 MobiDBLite consensus disorder prediction 915 929 - -
Cmu02g0189 929 CDD GluR_Plant 455 797 - -
Cmu02g0189 929 Gene3D - 51 399 - -
Cmu02g0189 929 FunFam Glutamate receptor 452 568 - -
Cmu02g0189 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Cmu02g0189 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 236 259 - -
Cmu02g0189 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0189 Cmu-Chr2:1787955 Cmu02g0875 Cmu-Chr2:10990529 0.00E+00 dispersed
Cmu02g0189 Cmu-Chr2:1787955 Cmu02g0873 Cmu-Chr2:10849604 5.10E-244 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0189 K05387 - csv:101203158 1625.53