Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0204 ATGGCCTGGACCCGACGATCCGCCGTCGGAAACGGCTCATCCGCCACCGTCTACCTCGCCTCCATCGCCTCCTCCGGCGAGCTATTCGCCGTCAAGTCCGCCGAGCTTCTCAAATCAGACTTCTTGAAAACAGAGCAGAGGATTCTTTCTTCCCTTTCCCACCCTTCAATTGTGGGCTACAGGGGATTCGATGTAACGACAGAAAATGGGAAGCTAATGTACAATCTCTTCATGGAGTACGTCGCCGGTGGCACTCTTACCGAAGAAATTGTCCGACGCGGCGGCAGGATTAAGGAGGCGGCGGCGGCGTTTTACACGCGTCAAATTGTTAGAGGTTTGGAGTACTTGCACAAACAGGGCTTGGTGCATTGTGATATCAAAGCTAAGAACATTTTAATCGGTGGAGATGGTTTGAAGATTGCTGATTTCGGTTGCTCCAAATGGGTTTCTGAGACGGAGGCGGTAATCAGCGGAACGCCGATGTTCATGGCACCGGAAGTGGCGCGTGGGGAAAAACAGGGGATTTCCTCTGATATATGGGCACTTGGGTGTACTTTAATCGAAATGGTCACCGGCGCTCCACCATGGCCCATCTCCGGCGACCCTGTTTCGGTGCTGTACCGGATCGGATATTCCGGCGAATCGCCGGCAATTCCGAGTTTTCTATCGGAGAAAGCGAAGGATTTTTTAAGGAAATGCTTGAGAAGGGACCCAACAGAAAGATGGAGCGCGAATCAACTTCTTGAACATCCATTTTTTGTGGAATTGAGTTCTGGGTCGGAGGAAATCAAGGAATTACATCCACATTCCGAATCTCCGACGAGTATTTTGGATCAAAGCCTCTGGAGTTTGTTAGAAGAAGAATCAGAAACTCTGTTGAAAACAGAGCAATGGGATGACGACGACGACGACGACAGAATCAAAGGGCTGGCGATGTTTTCAGGAGAAATTAAATGGGAATTGGGAGATGAGAATTGGATCACAATCAGAAGCTGTGTAGATAGTGAAGATGAAGAAGAATCCAGTTTTAGAAGAAATGATTTAGACTTAGTGGAACAGGAAAGAATAGGTAGTGGGAAAATCCAGTGTTTGGAATTGTTAGATAAAACAGTTAGCTTTAGAGTAAGGAAAAGTAATATTCTAATTAGTGAAATTAGTACCAACATTGGACAAATCTAA 1179 46.82 MAWTRRSAVGNGSSATVYLASIASSGELFAVKSAELLKSDFLKTEQRILSSLSHPSIVGYRGFDVTTENGKLMYNLFMEYVAGGTLTEEIVRRGGRIKEAAAAFYTRQIVRGLEYLHKQGLVHCDIKAKNILIGGDGLKIADFGCSKWVSETEAVISGTPMFMAPEVARGEKQGISSDIWALGCTLIEMVTGAPPWPISGDPVSVLYRIGYSGESPAIPSFLSEKAKDFLRKCLRRDPTERWSANQLLEHPFFVELSSGSEEIKELHPHSESPTSILDQSLWSLLEEESETLLKTEQWDDDDDDDRIKGLAMFSGEIKWELGDENWITIRSCVDSEDEEESSFRRNDLDLVEQERIGSGKIQCLELLDKTVSFRVRKSNILISEISTNIGQI 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1987388 1988566 - CmPI595203_02g002040.1 Cmu02g0204 408253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0204 392 Gene3D Transferase(Phosphotransferase) domain 1 2 312 - -
Cmu02g0204 392 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0204 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g0204 392 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Cmu02g0204 392 SUPERFAMILY Protein kinase-like (PK-like) 6 292 IPR011009 -
Cmu02g0204 392 CDD STKc_MAPKKK 3 253 - -
Cmu02g0204 392 SMART serkin_6 3 253 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0204 392 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 253 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cmu02g0204 392 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0204 Cmu-Chr2:1987388 Cmu02g1236 Cmu-Chr2:25328246 2.30E-49 dispersed
Cmu03g0686 Cmu-Chr3:1034221 Cmu02g0204 Cmu-Chr2:1987388 8.40E-57 transposed
Cmu08g0526 Cmu-Chr8:17127559 Cmu02g0204 Cmu-Chr2:1987388 2.20E-10 transposed
Cmu09g1042 Cmu-Chr9:10509640 Cmu02g0204 Cmu-Chr2:1987388 3.80E-86 transposed
Cmu01g2125 Cmu-Chr1:34017387 Cmu02g0204 Cmu-Chr2:1987388 3.00E-88 wgd
Cmu02g0204 Cmu-Chr2:1987388 Cmu02g0901 Cmu-Chr2:11662217 2.50E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75277 PF00069 Pkinase 1.30E-58 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0204 K20716 - csv:101205351 607.831