Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0205 ATGGACGCCGCCGCACCTTCCCCTTCCCCTCCTCTGCCTACTCCCACTCCCCTGCAATTTCCGGTTAACCTCAATTCCACCCTCCCCGATCCCAACTATTCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCGCCACCCCCTCCTCCTCCACCCTCCTCCTCCCACCGCCCCTTCTTCGACGAAATGAACTTCTTCCCCGCCGATGATAAATCCCGCGTCCTTCTCTCTGCCTCTCACTCCAATCTCACTCCCACCAAACTCGACTTCAATGTTAACACGGGATTGAATCTCTTGACCACGAATTCGTGTAGCGATCAATCCATGGTGGATGATGGAGTTTCACCAAACCCAGAAGAAAAAAGAATAAAAAACGAGAGAGCAGTTCTTCAAGCTGAATTGGAGAGGATAAACTCGGAGAATCTACGATTAAAAGACATGTTAAATCAAGTGACGAGCAATTACCAAACACTGCAGATGCAATTCAACACGCTAATTCAAACCCAGAAAACAGGGGACGCCGGTGACCCGGTTGAGGAAAACGCCGGCAGTGGCGGAGGGAATAATAATAATAATAATAATAATAATCATAATAATATTGGTAATAAGCTGGTGCCCAGGCAATTTATGGATCTTGGATTAGCGACCAATATGGAGAACGATGAGCCGTCAATGTCGTCGTCGGAAGGGAGGAGTGGAGACCGGTCCCGGTCGCCAGGAACCACCGGAGAAGTAGCGTCGTCGAAACGGCATAGCCCAGATCAATCTTCCAATTGGGGTTCCAATAATAACAACAGCAACAACAATAATAAAGTTCCAAAATTCAGTTCTTCTTCGGGTAAAGATGTGGATCAAACTGAAGCTACCATGAGAAAGGCTAGAGTCTCCGTTCGAGCCAGATCAGAAGCCCCCATGATAACAGATGGATGTCAATGGAGAAAATATGGACAAAAAATGGCGAAGGGAAACCCTTGTCCACGAGCTTATTACCGGTGCACCATGGCCGCCGGCTGCCCAGTTAGAAAACAAGTACAAAGATGTGCAGAAGACAAAACAATTTTGATAACAACCTACGAAGGAAACCACAACCACCCATTGCCGCCGGCCGCCATGGCAATGGCTTCCACAACTTCATCGGCGGCCAGAATGCTTCTCTCAGGATCCATGTCAAGTGCAGATGGTTTAATGAACTCTAATTTTTTAGCAAGAACCCTATTGCCATGTTCTTCAAGCATGGCTACGATCTCAGCCTCAGCCCCATTTCCCACAGTCACATTGGACCTAACTCAAAACCCTAATCCTTTATTCCAACGCCCGGCTGCGGGTCACTTTCCTATCCCGTTTGCGGCCGGTCCGCCCCAAAGCTTCCCACAGATCTTCGGACATGCATTATACAATCAATCAAAATTCTCAGGCCTTCAAATGTCAAAGGATATTGAAGCACCACCACCTCCACCACCGCAGAATCCATTGGCCGACACGTTGAGTGCTGCGGGTGTAGCAATTGCATCCGACCCGAATTTCATTGCGGCATTGGCAACGGCAATGACGTCGCTGATCGGCGGATCGCATCATCAGAATGAGAATGGTAATGGCAGTAGTAATGTTGATAACAATACAAATAGCAACTCCCAACAGTAA 1638 48.53 MDAAAPSPSPPLPTPTPLQFPVNLNSTLPDPNYSPPPPPPPPPPPPPPPPPSSSHRPFFDEMNFFPADDKSRVLLSASHSNLTPTKLDFNVNTGLNLLTTNSCSDQSMVDDGVSPNPEEKRIKNERAVLQAELERINSENLRLKDMLNQVTSNYQTLQMQFNTLIQTQKTGDAGDPVEENAGSGGGNNNNNNNNNHNNIGNKLVPRQFMDLGLATNMENDEPSMSSSEGRSGDRSRSPGTTGEVASSKRHSPDQSSNWGSNNNNSNNNNKVPKFSSSSGKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQNPNPLFQRPAAGHFPIPFAAGPPQSFPQIFGHALYNQSKFSGLQMSKDIEAPPPPPPQNPLADTLSAAGVAIASDPNFIAALATAMTSLIGGSHHQNENGNGSSNVDNNTNSNSQQ 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2001391 2004387 - CmPI595203_02g002050.1 Cmu02g0205 408254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0205 545 MobiDBLite consensus disorder prediction 182 202 - -
Cmu02g0205 545 ProSiteProfiles WRKY domain profile. 300 366 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g0205 545 SUPERFAMILY WRKY DNA-binding domain 298 366 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g0205 545 FunFam probable WRKY transcription factor 31 290 367 - -
Cmu02g0205 545 SUPERFAMILY Formin homology 2 domain (FH2 domain) 40 46 - -
Cmu02g0205 545 SMART WRKY_cls 305 365 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g0205 545 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 109 526 IPR044810 GO:0003700(InterPro)
Cmu02g0205 545 MobiDBLite consensus disorder prediction 522 545 - -
Cmu02g0205 545 Coils Coil 119 153 - -
Cmu02g0205 545 Gene3D WRKY domain 290 367 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g0205 545 MobiDBLite consensus disorder prediction 217 299 - -
Cmu02g0205 545 Pfam WRKY DNA -binding domain 307 364 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g0205 545 MobiDBLite consensus disorder prediction 1 18 - -
Cmu02g0205 545 MobiDBLite consensus disorder prediction 1 60 - -
Cmu02g0205 545 MobiDBLite consensus disorder prediction 30 55 - -
Cmu02g0205 545 MobiDBLite consensus disorder prediction 168 202 - -
Cmu02g0205 545 MobiDBLite consensus disorder prediction 218 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0205 Cmu-Chr2:2001391 Cmu05g1093 Cmu-Chr5:10343610 2.50E-41 dispersed
Cmu01g2122 Cmu-Chr1:33992635 Cmu02g0205 Cmu-Chr2:2001391 4.00E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5674 PF03106 WRKY 2.50E-24 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0205 - - - 0.0