Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0216 ATGGATCAGAGAGAGGAAGAGCCAAAAATTGGCATTTCCAATATTACCGCCGTCACTACTAGACCGGTGGTAGAAGACAGTTGTTCTGACGACCCAAATTTTCTGCCAAAAATCTTCTTCGCGAAGAGCCCGCGAGAATTTTTCAACCATTCGGCAACTTCACAGTCCTTTGATCAAACAACAAATCAGCACACGAAGCTTCATCCCAATTGGATACTAATTCAATTCCATTCCCATATTAAAAATGTAAGCCGTCGTGTTTTACCAGCTCTAGAATTGCTCATTTCCAACCCAGTGAAAAATATCAAGTTGAACCCTCAATTTTCAGTCAACGGGGTCCTCTGTACACGGCAAAGCAACCAGGTGCTCAATTGGAAGCGAAATTTGGTTCATCTCTTCTTAGAATCCTGTTTTCTCATCTGGGTCTTCCTCGTTTTGGTCGATTTTGGGGTTTGTTTAGTCCAAATGAGCCCTCGATTTGGGTTTTTGTTGTTGTTTTTGTTCTCTGTTTTACTGGGAGCTGATTCAAAGTGCCCTAGAACATGCGATGTAGCTTTAGGTTCGTACTTTGTGTGGGAGGGTAGTACTTTGTCTCTCATCTCTCAAATGTTTCGGTTGCCGTCTCCTGATATAATCGTCAGCTACAATAGAGATAAAATTCCCAACAAAGACAGTGTTAATAGCGGCATCAGAATCAACGTTCCATTCTCCTGTGACTGTATTAGCGATACGTTTCTGGGTCATACGTTTCAGTACCAGATTAATAGTGGAGATACTTACAGTGAAATTGCGACCAAATTCTATTCGAACCTGACTACGGTGGACATGTTACAAAAATTCAATAATTTTGATGTTCTTAATCTTCCTCCAAATGGTATTTTGAATGTGGTAGTGAACTGCTCCTGTGGGAATCCTGATGTTTCCAAGACATATGGGCTGTTTGTCACTTACCCAATTCGATCCGATGATAGTTGGGATAAGTTGCAAACAGATACAAATGTCAGCTTGTCTTTGCTGCAGCAGTACAATCAGGGTGTGAATTTCAGCCCAGGGAATTTGATCTTTATTCCAGGCAGAGATAAAAGTGGCAACTATCCACCTCTGAATATTAGGACTTGCAGGAGAAAGTTGAAAAGTTCTAAATTGCTGGCGTTCTCCCAAGAACTGTCTTCTCAAGATGGGCGCGCTCTTGCCCCTGGAAGTTCGTTAGATAAATCTACTGAATCAAATGGTCAAGGTGGTGGTATAGCTGCCGTTACCGGTATTACTGTGGACAAATCAGTGGATTTCTCATATGAAGAGCTTGCCAAGGCCACGGACAACTTTAGCTTGGCTAACAAAATCGGTGAAGGTGGTTTCGGATCGGTTTACTATGCAGAACTCAGAGGAGAGAAAGCTGCAATAAAGAAGATGGACATGCAAGCTTCAAGGGAGTTCCTTGCAGAAATTAAGGTTCTAACACGCGTTCACCACTTGAACTTGGTGCGCTTGATAGGATATTGTGTTGAGAATTCTCTATTCCTAGTCTATGAGTACATTGAGAATGGCAACTTGAGCCAACATTTACGTGGCACTGGTCGGGATCCATTGCCGTGGCCTTCTAGGGTCCAAATAGCCCTCGATTCAGCTCGTGGCCTTGAGTATATCCATGAGCACACTGTTCCCGTTTATATTCATCGTGATATTAAATCCGCCAACATATTGATTGACAAAAATTTTCATGGAAAGGTTGCAGACTTTGGGCTAACCAAGTTAACTGAAGTTGGAAATTCTTCGCTTCCTACTCGTCTTGTGGGCACATTTGGATATATGCCACCCGAATATGCACAGTACGGTGATGTTTCTCCAAAGATAGATGTATATGCTTTTGGTGTTGTTCTTTATGAGCTTATTTCAGCCAAGGAAGCTGTGGTTAAGACGAACAAACCCAGTGCAATCAATGAATCAAAAGGCCTTGTCGCTTTGTTTGAAGATGTCCTGAATCAACCCGACGCAAAAGAGAACCTTCACAAACTAGTCGACCCAAGACTCGAAGAGAACTACCCTCTTGATTCGGTTTTCAAGATGGCTCAACTTGCCAAGGCATGTACACATGAGAATCCACAGCTACGGCCAAGCATGAGATCCATTGTGGTTGCTCTCATGACACTTTCTTCTGCGACAGAGGATTGGGACGTCGGCTCTTTCTATGAAAACCAAGCTCTCGTAAACTTGATGTCGGGAAGGTAG 2229 42.89 MDQREEEPKIGISNITAVTTRPVVEDSCSDDPNFLPKIFFAKSPREFFNHSATSQSFDQTTNQHTKLHPNWILIQFHSHIKNVSRRVLPALELLISNPVKNIKLNPQFSVNGVLCTRQSNQVLNWKRNLVHLFLESCFLIWVFLVLVDFGVCLVQMSPRFGFLLLFLFSVLLGADSKCPRTCDVALGSYFVWEGSTLSLISQMFRLPSPDIIVSYNRDKIPNKDSVNSGIRINVPFSCDCISDTFLGHTFQYQINSGDTYSEIATKFYSNLTTVDMLQKFNNFDVLNLPPNGILNVVVNCSCGNPDVSKTYGLFVTYPIRSDDSWDKLQTDTNVSLSLLQQYNQGVNFSPGNLIFIPGRDKSGNYPPLNIRTCRRKLKSSKLLAFSQELSSQDGRALAPGSSLDKSTESNGQGGGIAAVTGITVDKSVDFSYEELAKATDNFSLANKIGEGGFGSVYYAELRGEKAAIKKMDMQASREFLAEIKVLTRVHHLNLVRLIGYCVENSLFLVYEYIENGNLSQHLRGTGRDPLPWPSRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFHGKVADFGLTKLTEVGNSSLPTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKEAVVKTNKPSAINESKGLVALFEDVLNQPDAKENLHKLVDPRLEENYPLDSVFKMAQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVNLMSGR 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2067748 2073520 - CmPI595203_02g002160.1 Cmu02g0216 408265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0216 742 Gene3D Phosphorylase Kinase; domain 1 428 512 - -
Cmu02g0216 742 ProSitePatterns Protein kinases ATP-binding region signature. 448 470 IPR017441 GO:0005524(InterPro)
Cmu02g0216 742 CDD STKc_IRAK 448 711 - -
Cmu02g0216 742 Pfam LysM domain 252 291 IPR018392 -
Cmu02g0216 742 Pfam Protein tyrosine and serine/threonine kinase 444 713 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g0216 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 557 569 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g0216 742 FunFam LysM receptor kinase 2 421 512 - -
Cmu02g0216 742 SMART serkin_6 442 716 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0216 742 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 163 741 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
Cmu02g0216 742 ProSiteProfiles Protein kinase domain profile. 442 717 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g0216 742 FunFam PTI1-like tyrosine-protein kinase 3 513 728 - -
Cmu02g0216 742 SUPERFAMILY Protein kinase-like (PK-like) 426 714 IPR011009 -
Cmu02g0216 742 Gene3D Transferase(Phosphotransferase) domain 1 513 733 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0216 Cmu-Chr2:2067748 Cmu05g2611 Cmu-Chr5:34767071 1.60E-78 dispersed
Cmu02g0216 Cmu-Chr2:2067748 Cmu11g0534 Cmu-Chr11:5829654 5.80E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75278 PF00069 Pkinase 9.50E-46 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0216 K13429 - csv:101203576 1052.74