Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0224 ATGGAAGGAGGAGGATCCAGTGGAAGCAGCTGTTCATTCATGGCTACTTGTAACAGCACCAACAACAATAATACTAACACACCCATGATGATGATGATCAATAGTACTAATAATCCTCAAACGTTGGACAACAATAACAACAACAACAACAACAACAAGATGTTCTTGCCTTTGTCTTGGTCTTCTACTTCTTCCAACAATAATGCTCAAACTCAAAGGGTTTCTGCTTTTGTTCCTCAATCTAATACCAATAATAATGATCTTCTTACCACTTCCACTTCCAAAGCTAAAATTATGGCTCATCCTCTCTTCCCTCGCCTCCTCGCTGCCTACGTCAACTGCCAAAAGGTGGGTGCGCCGCCGGAAGTGGTGGCGAGGCTAGAGCAGGCGTGTGCCGTGGCGACGGGAAGCTGTAGGGCGGCGGGACGTGGGGATGATCCAGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACCAAATATGAACAAGAGTTGACCAAACCTTTTAAAGAAGCAATGCTCTTCTTCTCAAGAATTGAGTCTCAGCTGAAAACCCTAGCAGTTTCTTCTGATGGTTTCGAGTTGGTTGGGCAAAACGAGTGCTCGAAGGAGATTGAGGTGGATATGAACGAAAACTACATAGACCCTCAAGCCGAAGAGAAGGAACTCAAAGGCCAACTTCTACGCAAATACAGCGGATATCTTGGGAGCCTAAAACAAGAGTTTTTGAAGAAGAAAAAGAATGGGAAGTTGCCAAAAGAAGCTAGACAACAATTGCTCGACTGGTGGAGTCGACACTACAAATGGCCATATCCCTCGGAGTCGCAAAAGGTGGCGTTGGCGGAGTCGACGGGGCTAGACTTGAAGCAGATCAATAATTGGTTTATTAACCAAAGAAAGCGCCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTGATGGATGCTGCTCATCCACATTACTATTTGGACAATGTCATATGCAATCCTTTCTCTATGGATTGTTCTTCTACTCTTTTCTGA 1029 44.8 MEGGGSSGSSCSFMATCNSTNNNNTNTPMMMMINSTNNPQTLDNNNNNNNNNKMFLPLSWSSTSSNNNAQTQRVSAFVPQSNTNNNDLLTTSTSKAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGRGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKTLAVSSDGFELVGQNECSKEIEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMDCSSTLF 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2125033 2128947 - CmPI595203_02g002240.1 Cmu02g0224 408273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0224 342 Gene3D - 249 311 - -
Cmu02g0224 342 SUPERFAMILY Homeodomain-like 246 321 IPR009057 -
Cmu02g0224 342 SMART HOX_1 246 311 IPR001356 GO:0003677(InterPro)
Cmu02g0224 342 SMART KNOX2_2 139 190 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu02g0224 342 Pfam KNOX1 domain 95 132 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu02g0224 342 SMART ELK_2 224 245 IPR005539 GO:0003677(InterPro)
Cmu02g0224 342 ProSiteProfiles 'Homeobox' domain profile. 244 307 IPR001356 GO:0003677(InterPro)
Cmu02g0224 342 MobiDBLite consensus disorder prediction 37 68 - -
Cmu02g0224 342 CDD homeodomain 256 308 IPR001356 GO:0003677(InterPro)
Cmu02g0224 342 FunFam Homeobox protein knotted-1-like 2 249 311 - -
Cmu02g0224 342 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 66 314 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu02g0224 342 Pfam KNOX2 domain 144 188 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu02g0224 342 Pfam Homeobox KN domain 264 303 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu02g0224 342 ProSitePatterns 'Homeobox' domain signature. 282 305 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu02g0224 342 ProSiteProfiles ELK domain profile. 224 244 IPR005539 GO:0003677(InterPro)
Cmu02g0224 342 Pfam ELK domain 224 245 IPR005539 GO:0003677(InterPro)
Cmu02g0224 342 SMART KNOX1_2 92 136 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0224 Cmu-Chr2:2125033 Cmu05g1806 Cmu-Chr5:28165876 1.70E-72 dispersed
Cmu01g2113 Cmu-Chr1:33931257 Cmu02g0224 Cmu-Chr2:2125033 2.10E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5677 PF03791 KNOX2 6.20E-22 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0224 - - - 0.0