Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0236 ATGTCTGAAGAGCAAGCAATTTCAAATGCCTTCATTTGCAGCATCCCATCACTTGGATCCATCAACAACCCTTCTGTTGTCAAGAAGAAGAGGAATCTCCCTGGAAATCCAGATCCCGAAGCGGAAGTTGTGTCGTTGTCGCCTAAGACGCTAATGGCGACGAACCGATTCTTGTGTGAGATATGTGGGAAGGGTTTTCAAAGGGATCAAAACCTACAACTGCATAGGAGAGGGCACAATCTTCCATGGAAGCTAAAGCAAAGAAGCAATGGAAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTACATCACCATCCTTCAAGGGCTCTTGGAGATCTCACAGGAATTAAAAAGCACTTTTGCAGGAAGCATGGGGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGTACCAAAGAGTATAAATGTGACTGTGGGACTCCATTTTCAAGGAGAGATAGCTATCAATGA 534 43.82 MSEEQAISNAFICSIPSLGSINNPSVVKKKRNLPGNPDPEAEVVSLSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNGNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYQ 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2245428 2247985 + CmPI595203_02g002360.1 Cmu02g0236 408285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0236 177 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Cmu02g0236 177 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 161 176 - -
Cmu02g0236 177 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 176 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu02g0236 177 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cmu02g0236 177 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 134 158 - -
Cmu02g0236 177 SMART c2h2final6 57 79 IPR013087 -
Cmu02g0236 177 SMART c2h2final6 135 155 IPR013087 -
Cmu02g0236 177 Gene3D Classic Zinc Finger 53 80 - -
Cmu02g0236 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cmu02g0236 177 Gene3D Classic Zinc Finger 92 177 - -
Cmu02g0236 177 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
Cmu02g0236 177 SUPERFAMILY beta-beta-alpha zinc fingers 56 155 IPR036236 -
Cmu02g0236 177 FunFam protein indeterminate-domain 12-like 36 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0236 Cmu-Chr2:2245428 Cmu02g1033 Cmu-Chr2:18154500 2.10E-82 dispersed
Cmu02g0236 Cmu-Chr2:2245428 Cmu07g0903 Cmu-Chr7:22952426 1.70E-76 transposed
Cmu02g0236 Cmu-Chr2:2245428 Cmu05g1833 Cmu-Chr5:28402948 1.70E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5679 None None None None Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0236 K25870 - csv:101207997 363.999