Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0246 ATGATCTTTAGTTGTGGTCATCGAGATATAATCTGCGATAATGCCAAAGAACAAGGGAAAGGGGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGACGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTGTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG 480 42.08 MIFSCGHRDIICDNAKEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGGMDDDDDEGGGDAYIEFEDEDIDKI 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2306799 2307747 + CmPI595203_02g002460.1 Cmu02g0246 408295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0246 159 SMART eIF1neu4 41 123 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Cmu02g0246 159 PANTHER EIF-1A 15 159 IPR001253 GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005737(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)
Cmu02g0246 159 Hamap Translation initiation factor 1A [eif1a]. 29 123 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Cmu02g0246 159 ProSiteProfiles S1 domain IF1 type profile. 35 109 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Cmu02g0246 159 SUPERFAMILY Nucleic acid-binding proteins 17 155 IPR012340 -
Cmu02g0246 159 CDD S1_IF1A 46 122 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Cmu02g0246 159 Gene3D - 15 159 IPR012340 -
Cmu02g0246 159 Pfam Translation initiation factor 1A / IF-1 45 106 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Cmu02g0246 159 ProSitePatterns Eukaryotic initiation factor 1A signature. 54 76 IPR018104 GO:0003743(InterPro)|GO:0006413(InterPro)
Cmu02g0246 159 NCBIfam translation initiation factor eIF-1A 27 123 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Cmu02g0246 159 FunFam Eukaryotic translation initiation factor 1A 15 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0246 Cmu-Chr2:2306799 Cmu07g1545 Cmu-Chr7:30676980 3.70E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0246 K03236 - csv:101207840 264.233