Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu02g0246 | ATGATCTTTAGTTGTGGTCATCGAGATATAATCTGCGATAATGCCAAAGAACAAGGGAAAGGGGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGACGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTGTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG | 480 | 42.08 | MIFSCGHRDIICDNAKEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGGMDDDDDEGGGDAYIEFEDEDIDKI | 159 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2306799 | 2307747 | + | CmPI595203_02g002460.1 | Cmu02g0246 | 408295 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu02g0246 | 159 | SMART | eIF1neu4 | 41 | 123 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cmu02g0246 | 159 | PANTHER | EIF-1A | 15 | 159 | IPR001253 | GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005737(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro) | |
Cmu02g0246 | 159 | Hamap | Translation initiation factor 1A [eif1a]. | 29 | 123 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cmu02g0246 | 159 | ProSiteProfiles | S1 domain IF1 type profile. | 35 | 109 | IPR006196 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cmu02g0246 | 159 | SUPERFAMILY | Nucleic acid-binding proteins | 17 | 155 | IPR012340 | - | |
Cmu02g0246 | 159 | CDD | S1_IF1A | 46 | 122 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cmu02g0246 | 159 | Gene3D | - | 15 | 159 | IPR012340 | - | |
Cmu02g0246 | 159 | Pfam | Translation initiation factor 1A / IF-1 | 45 | 106 | IPR006196 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cmu02g0246 | 159 | ProSitePatterns | Eukaryotic initiation factor 1A signature. | 54 | 76 | IPR018104 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cmu02g0246 | 159 | NCBIfam | translation initiation factor eIF-1A | 27 | 123 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cmu02g0246 | 159 | FunFam | Eukaryotic translation initiation factor 1A | 15 | 159 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g0246 | Cmu-Chr2:2306799 | Cmu07g1545 | Cmu-Chr7:30676980 | 3.70E-46 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu02g0246 | K03236 | - | csv:101207840 | 264.233 |