Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu02g0273 | ATGCTCTTAGCTGTTATCAACTTTGCCGGGAACTTCATCGGACGTCTCTCAGCCGGAGCACCATCACTGCTTCCTCAACTCTTTGATTCGCCTGCTCGAATTCCGAATACGCACTTCTTGAGGTTTCAGTATACAACTAGACGTGGCGTGGCATCCAGTTTCTGTGTCAATCAAAGGGACCAGTTAGAGAATGAAGTTGATTCTGATCAATTGGAGCATGAAAACAGTTCAGAAAGTCAACCGCAAACGTCTCAGGACGATCCTGGTGGAACTAATGCATCAAAATCAGATCACAAATGCACAGGGGCTGCCAGTATTACACTTGAAGAAGCTGTCAAGCAGCCTGAAGTTACAATCGAACAAGTGGATCGAGGAGAAATCTCTAATATAGTGACTGAGAAAGTGACCCATAAGCCAATTACTGCAGAGCAGAACTCCCATTCTGATTTGAAAGTATGTATTACCTCTACTATACGAGAGAAAGTATCAGAGGATGGGTATAACTGGCGGAAATATGGTCAGAAACTGGTTAAGGGAAATGTCTTTGTTAGAAGCTATTACAGATGTACGCATCCTACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAGATCACAGACACTGTTTACTTTGGCCAGCATGATCATCCTAAAGCTCAACCTCACATTCCAGTTGCTGTTGGAGTCGTTACCATGGTTGAAGAAAAATTAGATGAACATGCTTCTGGAAATTCTCAAGATAAGACCTCCATTGCGCCTGGCCAGACACCTCATCAAACTGAGCTAGCTGATATGCGTCAACCGTCGTCAGTTATGGCCAGTGATGATGTAAAAGATGAAGCTTCGAAAAGGTCTAGGATTAATGATGAGGTTGACAGTGATGATACACCAGACTTGAAACGAGAGAAGAAAAGATGTAATATTGACGTGACAGTAGCAGACAAGTCAACTGTTGAATCTCGGGTTGTTGTTCAAACTCCTAGCGAGGTTGACATCGTCAATGATGGATACCGCTGGCGGAAGTATGGACAGAAATTGGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTTATGATCCAAAAGTGGTGCTTACCACGTATGAGGGTCAGCATGACCATGATATGCCTCCTACAAGGACGGTGACGTTGAATTCAGTTGGATCCACAGCAGCCCATAGTGATGAGACAAAACCAAAACCGGTCGGTAGTTCCATTGGCCATGATACGGTGGTTCATGCTACTAAGGATTCTCTAAATAATTCGAGTTCTGAAGGCAAATTAATTGAAAAGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATGGCATAGTCCTCGATATGGTGGTCAATCCTAGTCCGGGAGTTGCGAGTGGACAAAATAAGCAGCTCAAAGTAGCAATTGAAAGCTAA | 1470 | 43.95 | MLLAVINFAGNFIGRLSAGAPSLLPQLFDSPARIPNTHFLRFQYTTRRGVASSFCVNQRDQLENEVDSDQLEHENSSESQPQTSQDDPGGTNASKSDHKCTGAASITLEEAVKQPEVTIEQVDRGEISNIVTEKVTHKPITAEQNSHSDLKVCITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHDHPKAQPHIPVAVGVVTMVEEKLDEHASGNSQDKTSIAPGQTPHQTELADMRQPSSVMASDDVKDEASKRSRINDEVDSDDTPDLKREKKRCNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASYDPKVVLTTYEGQHDHDMPPTRTVTLNSVGSTAAHSDETKPKPVGSSIGHDTVVHATKDSLNNSSSEGKLIEKNGKSNATEASDGIVLDMVVNPSPGVASGQNKQLKVAIES | 489 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2505931 | 2509803 | + | CmPI595203_02g002730.1 | Cmu02g0273 | 408322 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu02g0273 | 489 | MobiDBLite | consensus disorder prediction | 241 | 302 | - | - | |
Cmu02g0273 | 489 | MobiDBLite | consensus disorder prediction | 247 | 270 | - | - | |
Cmu02g0273 | 489 | MobiDBLite | consensus disorder prediction | 279 | 302 | - | - | |
Cmu02g0273 | 489 | SUPERFAMILY | WRKY DNA-binding domain | 328 | 396 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu02g0273 | 489 | ProSiteProfiles | WRKY domain profile. | 158 | 222 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu02g0273 | 489 | MobiDBLite | consensus disorder prediction | 75 | 99 | - | - | |
Cmu02g0273 | 489 | Gene3D | WRKY domain | 323 | 389 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu02g0273 | 489 | Coils | Coil | 59 | 79 | - | - | |
Cmu02g0273 | 489 | Pfam | WRKY DNA -binding domain | 164 | 220 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu02g0273 | 489 | Pfam | WRKY DNA -binding domain | 337 | 394 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu02g0273 | 489 | SMART | WRKY_cls | 336 | 395 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu02g0273 | 489 | SMART | WRKY_cls | 163 | 221 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu02g0273 | 489 | FunFam | WRKY transcription factor 57 | 322 | 396 | - | - | |
Cmu02g0273 | 489 | FunFam | WRKY transcription factor | 152 | 223 | - | - | |
Cmu02g0273 | 489 | Gene3D | WRKY domain | 148 | 222 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu02g0273 | 489 | MobiDBLite | consensus disorder prediction | 433 | 458 | - | - | |
Cmu02g0273 | 489 | ProSiteProfiles | WRKY domain profile. | 331 | 396 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu02g0273 | 489 | MobiDBLite | consensus disorder prediction | 407 | 458 | - | - | |
Cmu02g0273 | 489 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 248 | 410 | IPR044810 | GO:0003700(InterPro) | |
Cmu02g0273 | 489 | SUPERFAMILY | WRKY DNA-binding domain | 158 | 221 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu02g0273 | 489 | MobiDBLite | consensus disorder prediction | 65 | 99 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g0273 | Cmu-Chr2:2505931 | Cmu10g1215 | Cmu-Chr10:4932714 | 7.00E-59 | dispersed | |
Cmu10g1270 | Cmu-Chr10:5592451 | Cmu02g0273 | Cmu-Chr2:2505931 | 9.60E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5681 | PF03106 | WRKY | 1.30E-25 | CL0274 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu02g0273 | K18834 | - | csv:101212482 | 750.355 |