Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g0273 ATGCTCTTAGCTGTTATCAACTTTGCCGGGAACTTCATCGGACGTCTCTCAGCCGGAGCACCATCACTGCTTCCTCAACTCTTTGATTCGCCTGCTCGAATTCCGAATACGCACTTCTTGAGGTTTCAGTATACAACTAGACGTGGCGTGGCATCCAGTTTCTGTGTCAATCAAAGGGACCAGTTAGAGAATGAAGTTGATTCTGATCAATTGGAGCATGAAAACAGTTCAGAAAGTCAACCGCAAACGTCTCAGGACGATCCTGGTGGAACTAATGCATCAAAATCAGATCACAAATGCACAGGGGCTGCCAGTATTACACTTGAAGAAGCTGTCAAGCAGCCTGAAGTTACAATCGAACAAGTGGATCGAGGAGAAATCTCTAATATAGTGACTGAGAAAGTGACCCATAAGCCAATTACTGCAGAGCAGAACTCCCATTCTGATTTGAAAGTATGTATTACCTCTACTATACGAGAGAAAGTATCAGAGGATGGGTATAACTGGCGGAAATATGGTCAGAAACTGGTTAAGGGAAATGTCTTTGTTAGAAGCTATTACAGATGTACGCATCCTACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAGATCACAGACACTGTTTACTTTGGCCAGCATGATCATCCTAAAGCTCAACCTCACATTCCAGTTGCTGTTGGAGTCGTTACCATGGTTGAAGAAAAATTAGATGAACATGCTTCTGGAAATTCTCAAGATAAGACCTCCATTGCGCCTGGCCAGACACCTCATCAAACTGAGCTAGCTGATATGCGTCAACCGTCGTCAGTTATGGCCAGTGATGATGTAAAAGATGAAGCTTCGAAAAGGTCTAGGATTAATGATGAGGTTGACAGTGATGATACACCAGACTTGAAACGAGAGAAGAAAAGATGTAATATTGACGTGACAGTAGCAGACAAGTCAACTGTTGAATCTCGGGTTGTTGTTCAAACTCCTAGCGAGGTTGACATCGTCAATGATGGATACCGCTGGCGGAAGTATGGACAGAAATTGGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTTATGATCCAAAAGTGGTGCTTACCACGTATGAGGGTCAGCATGACCATGATATGCCTCCTACAAGGACGGTGACGTTGAATTCAGTTGGATCCACAGCAGCCCATAGTGATGAGACAAAACCAAAACCGGTCGGTAGTTCCATTGGCCATGATACGGTGGTTCATGCTACTAAGGATTCTCTAAATAATTCGAGTTCTGAAGGCAAATTAATTGAAAAGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATGGCATAGTCCTCGATATGGTGGTCAATCCTAGTCCGGGAGTTGCGAGTGGACAAAATAAGCAGCTCAAAGTAGCAATTGAAAGCTAA 1470 43.95 MLLAVINFAGNFIGRLSAGAPSLLPQLFDSPARIPNTHFLRFQYTTRRGVASSFCVNQRDQLENEVDSDQLEHENSSESQPQTSQDDPGGTNASKSDHKCTGAASITLEEAVKQPEVTIEQVDRGEISNIVTEKVTHKPITAEQNSHSDLKVCITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHDHPKAQPHIPVAVGVVTMVEEKLDEHASGNSQDKTSIAPGQTPHQTELADMRQPSSVMASDDVKDEASKRSRINDEVDSDDTPDLKREKKRCNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASYDPKVVLTTYEGQHDHDMPPTRTVTLNSVGSTAAHSDETKPKPVGSSIGHDTVVHATKDSLNNSSSEGKLIEKNGKSNATEASDGIVLDMVVNPSPGVASGQNKQLKVAIES 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2505931 2509803 + CmPI595203_02g002730.1 Cmu02g0273 408322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g0273 489 MobiDBLite consensus disorder prediction 241 302 - -
Cmu02g0273 489 MobiDBLite consensus disorder prediction 247 270 - -
Cmu02g0273 489 MobiDBLite consensus disorder prediction 279 302 - -
Cmu02g0273 489 SUPERFAMILY WRKY DNA-binding domain 328 396 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g0273 489 ProSiteProfiles WRKY domain profile. 158 222 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g0273 489 MobiDBLite consensus disorder prediction 75 99 - -
Cmu02g0273 489 Gene3D WRKY domain 323 389 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g0273 489 Coils Coil 59 79 - -
Cmu02g0273 489 Pfam WRKY DNA -binding domain 164 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g0273 489 Pfam WRKY DNA -binding domain 337 394 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g0273 489 SMART WRKY_cls 336 395 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g0273 489 SMART WRKY_cls 163 221 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g0273 489 FunFam WRKY transcription factor 57 322 396 - -
Cmu02g0273 489 FunFam WRKY transcription factor 152 223 - -
Cmu02g0273 489 Gene3D WRKY domain 148 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g0273 489 MobiDBLite consensus disorder prediction 433 458 - -
Cmu02g0273 489 ProSiteProfiles WRKY domain profile. 331 396 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g0273 489 MobiDBLite consensus disorder prediction 407 458 - -
Cmu02g0273 489 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 248 410 IPR044810 GO:0003700(InterPro)
Cmu02g0273 489 SUPERFAMILY WRKY DNA-binding domain 158 221 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g0273 489 MobiDBLite consensus disorder prediction 65 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0273 Cmu-Chr2:2505931 Cmu10g1215 Cmu-Chr10:4932714 7.00E-59 dispersed
Cmu10g1270 Cmu-Chr10:5592451 Cmu02g0273 Cmu-Chr2:2505931 9.60E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5681 PF03106 WRKY 1.30E-25 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g0273 K18834 - csv:101212482 750.355